Parental gene: | MTERFD1, ENSEEUG00000004188 |
| Aliases: | None |
| Description: | MTERF domain containing 1 [Source:HGNC Symbol;Acc:24258] |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | scaffold_258453:5777..17609(+) |
>ENSEEUG00000004188
TTTGACTCAATTAAATCGAGTAACTTCATTAATATTATGCAGCTTAGAAAACGTCTGCCGAGACCCAGAAAAACAGTGTT
GTGTGGCCTTTCTGCTCAGCCTCAGGTGTCCTCTGACAATTGTTTTCTCCAGTGGGGATTTAAAACTTACAGCACTTCCT
CCTTGTGGAATAGTTCCCAGTCTCCCACCTGTACTCGGCAGGAGAATAATTCTGCCCAGAGCACTCTGCTTCCTTCTGTG
ATTGAACAGTCAGAGAAGACACAACAGATACCCAGCTTTGACTCTGAACTGTCTCTGGAAGAATTGGACGATTTGCCTCC
ATTGTCTCCGTTGCAGCCAGTATCTGAGGAAGAGGCTATTCGAATTATTGCAAACCCGCCATTGCCCCCCGTTTCATCCA
CACTGCGAGTTTATGTGGACCATTCTGAGACTCTGCAGAAGTTAGTGCTTCTAGGAGTGGATTTATCCAAGATAGAAAAA
CATCCAGATGCAGCCAACCTCCTCCTGAGACTGGATTTTGAAAAACACATTAAACACATACTCCTATTCCTTAAAGATTT
GGGGATAGAGGATAACCAACTGGGAGCATTCCTAACCAAAAATTATGCTATTTTTTCTGAAGACCTTGAAAATCTTCAGA
CCAGAGTGGCTTATCTACAGTCAAAAAATTTCAGTAAAGCAGATATTACACAGATGGTCACAAAAGCACCATTCCTGCTA
AGTTTTTCAGTGGAGAGGCTGGATAACAGACTGGGATTTTTCCAAAAAGAACTTGAACTTAGTGTGAAGAAGACTAGAGA
TCTGGTAGTCCGTCTCCCAAGGCTGCTAACTGGAAGTCTGGAACCTGTGAAAGAAAATATGAAGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAGGAAGCTTACT
GAGACTTTCGACTTTGTGCACAATGTGATGAGTCCCCACCACCTCATCGTCAAGTTCCCACAGGTATTTAACACAAGGTT
GTTTAAAGTAAAAGAAAGACATTTGTTTCTTCACTATTTAGGCAGAGCACAGTATGATCCAGCAAAACCTAACTACATCT
CTTTGGACAAACTGGTATCTGTGCCTGATGAAAAATTTTGTGAAGAGATTGCCAAAGCCTCAGTTTGGGACTTTGAAAAA
TTTTTAAAAACTCTTTAG
TTTGACTCAATTAAATCGAGTAACTTCATTAATATTATGCAGCTTAGAAAACGTCTGCCGAGACCCAGAAAAACAGTGTT
GTGTGGCCTTTCTGCTCAGCCTCAGGTGTCCTCTGACAATTGTTTTCTCCAGTGGGGATTTAAAACTTACAGCACTTCCT
CCTTGTGGAATAGTTCCCAGTCTCCCACCTGTACTCGGCAGGAGAATAATTCTGCCCAGAGCACTCTGCTTCCTTCTGTG
ATTGAACAGTCAGAGAAGACACAACAGATACCCAGCTTTGACTCTGAACTGTCTCTGGAAGAATTGGACGATTTGCCTCC
ATTGTCTCCGTTGCAGCCAGTATCTGAGGAAGAGGCTATTCGAATTATTGCAAACCCGCCATTGCCCCCCGTTTCATCCA
CACTGCGAGTTTATGTGGACCATTCTGAGACTCTGCAGAAGTTAGTGCTTCTAGGAGTGGATTTATCCAAGATAGAAAAA
CATCCAGATGCAGCCAACCTCCTCCTGAGACTGGATTTTGAAAAACACATTAAACACATACTCCTATTCCTTAAAGATTT
GGGGATAGAGGATAACCAACTGGGAGCATTCCTAACCAAAAATTATGCTATTTTTTCTGAAGACCTTGAAAATCTTCAGA
CCAGAGTGGCTTATCTACAGTCAAAAAATTTCAGTAAAGCAGATATTACACAGATGGTCACAAAAGCACCATTCCTGCTA
AGTTTTTCAGTGGAGAGGCTGGATAACAGACTGGGATTTTTCCAAAAAGAACTTGAACTTAGTGTGAAGAAGACTAGAGA
TCTGGTAGTCCGTCTCCCAAGGCTGCTAACTGGAAGTCTGGAACCTGTGAAAGAAAATATGAAGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAGGAAGCTTACT
GAGACTTTCGACTTTGTGCACAATGTGATGAGTCCCCACCACCTCATCGTCAAGTTCCCACAGGTATTTAACACAAGGTT
GTTTAAAGTAAAAGAAAGACATTTGTTTCTTCACTATTTAGGCAGAGCACAGTATGATCCAGCAAAACCTAACTACATCT
CTTTGGACAAACTGGTATCTGTGCCTGATGAAAAATTTTGTGAAGAGATTGCCAAAGCCTCAGTTTGGGACTTTGAAAAA
TTTTTAAAAACTCTTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 10 .61 RPM |
| SRP017611_kidney | 12 .38 RPM |
| SRP017611_brain | 12 .25 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000007893 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004303 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_123 | 72.08 | 58.77 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000004188 retrocopies