RetrogeneDB ID: | retro_eeur_172 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_140388:831..1230(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | THAP1 | ||
Ensembl ID: | ENSEEUG00000003332 | ||
Aliases: | None | ||
Description: | THAP domain containing, apoptosis associated protein 1 [Source:HGNC Symbol;Acc:20856] |
Percent Identity: | 75.56 % |
Parental protein coverage: | 61.03 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MVQSCSAYGCKNRYDKDKPVSFHKFPLTRPNLCKEWEAAVRRKNFKPTKYSSICSEHFTPDCFKRECNNK |
MVQSC.AYGCKN.Y.KDKP.SFHKF.LTRPNLCKE.EAA.RRKNFK.TKY..ICSEHFTPDCFKRECNNK | |
Retrocopy | MVQSCTAYGCKNPYNKDKPISFHKFRLTRPNLCKECEAADRRKNFKSTKYTRICSEHFTPDCFKRECNNK |
Parental | LLKENAVPTIFLCTEPHDKKEEL-LEPQGQLHPPPL-APPISQVDAA-IGLLMP-PLQTP-DNLS |
LLKENAVP.IF.CTEP.D.KEEL.LEP..QL.P..L.AP.I.QVD.A.IG.....PL..P.DNLS | |
Retrocopy | LLKENAVPIIFHCTEPDDRKEEL>LEPRRQLSPAFLIAPLIFQVDPA>IGITQALPLSNP>DNLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 2 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 4 .88 RPM |
SRP017611_liver | 0 .00 RPM | 2 .25 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000003332 | 2 retrocopies |
retro_eeur_131, retro_eeur_172 ,
|
Myotis lucifugus | ENSMLUG00000003837 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001391 | 1 retrocopy |