RetrogeneDB ID: | retro_eeur_413 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_291294:696..1065(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NT5C3B | ||
Ensembl ID: | ENSEEUG00000013493 | ||
Aliases: | None | ||
Description: | 5'-nucleotidase, cytosolic IIIB [Source:HGNC Symbol;Acc:28300] |
Percent Identity: | 54.47 % |
Parental protein coverage: | 54.91 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IEIDPQRSIKEKLPHMVEWWTKAHNLLCQQKIQKFQIAQMVRESSVMLREGYKAFFNTLYQNNIPLFIFS |
IEIDP......K.P.MVEW.TK.H.LL..Q.I.K..I...V.ES..ML.EG...FF..L.Q..IP.FIFS | |
Retrocopy | IEIDPHMTVEDKFPYMVEWYTKSHGLLVEQGIPKAKIQEVVTESDIMLKEGCGNFFDKLHQRDIPMFIFS |
Parental | AGVGDVLEEIIRQMKVFHSNIHIVSNYMDFDEDGILQGFKGQLIHTYNKNSSV |
AG..DVLEE.IRQ..V.HSN...VSN.MDFD......GFKG.LIH..NK.... | |
Retrocopy | AGICDVLEEVIRQAGVYHSNVKVVSNFMDFDDNRVVKGFKGELIHVFNKHGAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 19 .82 RPM | 69 .78 RPM |
SRP017611_kidney | 31 .32 RPM | 40 .70 RPM |
SRP017611_liver | 10 .29 RPM | 14 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005754 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013493 | 1 retrocopy |
retro_eeur_413 ,
|
Felis catus | ENSFCAG00000023499 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010759 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000009181 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010634 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006434 | 1 retrocopy |