RetrogeneDB ID: retro_mputfur_1594

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897307.1:1450..2028(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NT5C3B
• Ensembl ID: ENSMPUG00000010759
• Aliases: None
• Description: 5'-nucleotidase, cytosolic IIIB [Source:HGNC Symbol;Acc:28300]

Sequence

>retro_mputfur_1594
CCAGCCTCATAGAGCTGCTGAGCTGCCCTGAGCTCTCCCTGGGCCCAGTGCAGAGCTGGTATCAGTGCTTCTCAGGTCTT
GGGACAGGTGACATCCTGATGAAGACCAGGGTCCTGATGTTGGCAGTCTGGACAGGGGTAAGAGATTGTTGGCACCCACT
GCAGGGGTGGAGGAGACCACTTACAGGTCATTTCTGATTTTGACATGAACTTGAGCAGGTTTGCATGCAGTGAATGGACT
TGTAAGAAGTGATGGACTTCTTACAACATTCTAGAGAGCAGCAAGATCATCAGCGGTGAGCAATACTGGAATGAGCTTAA
GCAGCTCCTTCACCACTATTATCCAGCTGAGATTGACCCACACTGCACCATCATAGAGAAGTTACTTCATCTAAGGGACT
GGTGGACCAAAGCACATGATTGTCCATGCCAGCAGATGATTGAGAAGTTTCAGATAGCCCAAGTGATTAGAGTGTCCAAT
GCAATGCTTAGGGAGGGATTCAAGACAAGACATTCCTCAATAATCTCTAACAACATAACTTTTTCCTTTTCATCTTTTCC
ACAGACCTTGGTGATATC

Alignment

ORF - retro_mputfur_1594 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 57.87 %
• Parental protein coverage: 56.46 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  PASQGCGAGAGLPLGPARCRGQRFSRVSGQVST-LMKATVLMR-QPGRVQEIVGALRRGGGDRLQVISDF
          PAS..C.A....P....R..G...S.V.GQV...LMK..VLM..Q.G...EIVG...RGGGD.LQVISDF
Retrocopy PAS*SC*AALSSPWAQCRA-GISASQVLGQVTS<LMKTRVLML>QSGQG*EIVGTHCRGGGDHLQVISDF

Parental  DMTLSRFAYNGKRCP---SSYNILDNSKIIS-EECQNELKALLHHYYPIEIDPHRTIKEKLPHMVEWWTK
          DM.LSRFA.....C.....SYNIL..SKIIS.E...NELK.LLHHYYP.EIDPH.TI.EKL.H...WWTK
Retrocopy DMNLSRFACSEWTCKK*WTSYNILESSKIISGEQYWNELKQLLHHYYPAEIDPHCTIIEKLLHLRDWWTK

Parental  AHDLLCQQKIQKAQIAQVVKESNAMLREGYKTFFNTLYQNNIP-LFIF--SAGIGDI
          AHD..CQQ.I.K.QIAQV...SNAMLREG.KT.......NNI...F.F..S...GDI
Retrocopy AHDCPCQQMIEKFQIAQVIRVSNAMLREGFKTRHSSIISNNIT<FFLFIFSTDLGDI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1594 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1594 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000005754	1 retrocopy	retro_amel_1542,
Erinaceus europaeus	ENSEEUG00000013493	1 retrocopy	retro_eeur_413,
Felis catus	ENSFCAG00000023499	1 retrocopy	retro_fcat_1017,
Mustela putorius furo	ENSMPUG00000005546	2 retrocopies	retro_mputfur_1175, retro_mputfur_577,
Mustela putorius furo	ENSMPUG00000010759	2 retrocopies	retro_mputfur_1354, retro_mputfur_1594 ,
Pteropus vampyrus	ENSPVAG00000010634	1 retrocopy	retro_pvam_233,
Sorex araneus	ENSSARG00000006434	1 retrocopy	retro_sara_505,