RetrogeneDB ID: | retro_eeur_520 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_336282:4442..5090(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NACA | ||
Ensembl ID: | ENSEEUG00000010458 | ||
Aliases: | None | ||
Description: | nascent polypeptide-associated complex alpha subunit [Source:HGNC Symbol;Acc:7629] |
Percent Identity: | 87.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MPGEATETVPAT-EQELPQPQAETGSGTESDSDESVPELE-EQDSTQATTQQAQLAAAAEIDEEPVSKAK |
MPGEATETVPAT.EQELPQPQ.ETGSGTESDSDESV.....E.......T.Q.....AAE.DEEPVSKAK | |
Retrocopy | MPGEATETVPAT>EQELPQPQTETGSGTESDSDESVSTRA>EEQDSTEATTQRAQLVAAELDEEPVSKAK |
Parental | QSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEA-KIEDLSQQAQL |
QS.SEKK.RKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEA.KIEDLSQQAQL | |
Retrocopy | QSQSEKKERKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEA>KIEDLSQQAQL |
Parental | AAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIV |
AAAEKFKVQGEAVSNIQENTQTPTVQEE.EEEEVDET.V.VKDIELVMSQANVSRAKA.RALKNNSNDIV | |
Retrocopy | AAAEKFKVQGEAVSNIQENTQTPTVQEETEEEEVDETRVKVKDIELVMSQANVSRAKAFRALKNNSNDIV |
Parental | NAIMELTM |
NAIMELTM | |
Retrocopy | NAIMELTM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .81 RPM | 136 .49 RPM |
SRP017611_kidney | 0 .19 RPM | 303 .06 RPM |
SRP017611_liver | 0 .16 RPM | 208 .04 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004175 | 3 retrocopies | |
Bos taurus | ENSBTAG00000010701 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000000141 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000010701 | 8 retrocopies | |
Erinaceus europaeus | ENSEEUG00000010458 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000004598 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000001169 | 16 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017449 | 7 retrocopies | |
Pongo abelii | ENSPPYG00000004670 | 6 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002175 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009028 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004028 | 2 retrocopies |