RetrogeneDB ID: | retro_cfam_974 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 20:2148628..2149260(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NACA | ||
Ensembl ID: | ENSCAFG00000000141 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris nascent polypeptide-associated complex alpha subunit (NACA), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001252257] |
Percent Identity: | 85.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQS |
MPGEATET.PATEQELPQPQAET.SG.ESDSDES.PELEEQDSTQATTQQAQLAA.AEI.EEPVS.AKQS | |
Retrocopy | MPGEATETIPATEQELPQPQAETRSGKESDSDESEPELEEQDSTQATTQQAQLAAVAEINEEPVSRAKQS |
Parental | RSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAA |
RSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA.A | |
Retrocopy | RSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLATA |
Parental | EKFKVQGEAVSNIQENTQTPTVQEESEEEEVD-ETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNA |
EKFKV.GEAVS....N.Q..T......EE......GVEVKDIELVMSQAN.S.AKAV.AL.NNSNDIVNA | |
Retrocopy | EKFKVRGEAVS----NIQENTQTPTVQEESEE<SRGVEVKDIELVMSQANMSKAKAV*ALENNSNDIVNA |
Parental | IMELTM |
IMELTM | |
Retrocopy | IMELTM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 186 .98 RPM |
SRP017611_brain | 0 .00 RPM | 59 .46 RPM |
SRP017611_kidney | 0 .13 RPM | 400 .58 RPM |
SRP017611_liver | 0 .00 RPM | 124 .00 RPM |