RetrogeneDB ID: | retro_eeur_565 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_345886:43961..44390(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB11B | ||
Ensembl ID: | ENSEEUG00000009165 | ||
Aliases: | None | ||
Description: | RAB11B, member RAS oncogene family [Source:HGNC Symbol;Acc:9761] |
Percent Identity: | 99.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ |
MGTRDDEYDYLFKVVLIGDSG.GKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ | |
Retrocopy | MGTRDDEYDYLFKVVLIGDSGIGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ |
Parental | ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR |
ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR | |
Retrocopy | ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR |
Parental | AFA |
AFA | |
Retrocopy | AFA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 6 .77 RPM | 3 .06 RPM |
SRP017611_kidney | 23 .82 RPM | 8 .81 RPM |
SRP017611_liver | 5 .79 RPM | 1 .13 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013525 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010778 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000007700 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009165 | 2 retrocopies |
retro_eeur_284, retro_eeur_565 ,
|
Mus musculus | ENSMUSG00000077450 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003227 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000009335 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000009645 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000667 | 1 retrocopy |