RetrogeneDB ID: | retro_eeur_577 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_347210:51969..52479(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNJ | ||
Ensembl ID: | ENSEEUG00000002270 | ||
Aliases: | None | ||
Description: | cyclin J [Source:HGNC Symbol;Acc:23434] |
Percent Identity: | 98.82 % |
Parental protein coverage: | 66.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ELKLPSYKGQSPQLSLRRYFADLIAIVSNRFTLCPSARHLAVYLLDLFMDRYDISIQQLHLVALSCLLLA |
ELKLPSYKGQSPQLSLRRYFADLIAIVSNRFTLCPSARHLAVYLLDLFMDRYDISIQQLHLVALSCLLLA | |
Retrocopy | ELKLPSYKGQSPQLSLRRYFADLIAIVSNRFTLCPSARHLAVYLLDLFMDRYDISIQQLHLVALSCLLLA |
Parental | SKFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLLHMELLLLETFQWNLCLPTAAHFIEYYLSEAVHETD |
SKFEEKEDSVPKLEQLNSLGCMTN.NLVLTKQNLLHMELLLLETFQWNLCLPTAAHFIEYYLSE.VHETD | |
Retrocopy | SKFEEKEDSVPKLEQLNSLGCMTNVNLVLTKQNLLHMELLLLETFQWNLCLPTAAHFIEYYLSEEVHETD |
Parental | LHDGWPMICLEKTKLYMAKYADYFLEVSLQ |
LHDGWPMICLEKTKLYMAKYADYFLEVSLQ | |
Retrocopy | LHDGWPMICLEKTKLYMAKYADYFLEVSLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .32 RPM | 1 .77 RPM |
SRP017611_kidney | 0 .56 RPM | 0 .75 RPM |
SRP017611_liver | 0 .32 RPM | 2 .25 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016259 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000002270 | 2 retrocopies |
retro_eeur_535, retro_eeur_577 ,
|
Homo sapiens | ENSG00000107443 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006034 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011114 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009466 | 1 retrocopy |