>retro_eeur_583
ATCTCCCTTTGCAAGGAGCTGATTCGTCTTGCACTGGAAGGATTGTCCTACTACCACACTTACGACAGATTCTTTTTGGG
CATCACTGTTGTTCTTGGTTTTGTGGGATGGACATCTTATGCTTCTCTGTTGATCATCAAGTCTCATTCCAACCTCACCA
GAGGTGGTAGTAACAAAATTAAGAAACCAAATCATCTCCTGACATGTACTTTTGTAGCTGTTGGCATTGCAATAGCATTT
TTCCTGCTGATTCAGTCCTGTCCCTGGACTTACTACGTGTACTGTCTGTTGCCGGTGCCAATATGGCATGCGCTTCTGAG
CGAATTTCCAGTGATTGAGGACCTTGTCAAGTCTCTGCTGACCTTTCCCCCTGGTCAATTTATTGGAAGCCTGTTAGTCT
TTGGTCTGGGACTTGAAATACTAGTTCTCAGTTTTTTCTACCGCTATATGCTTACAGCTGGACTTACAGCATTTGCGGGC
TGGCCATTCGTCACTCAGCTGTGGACTCGAGCAAAGAGCACCTCACTGAGTTGGACTTTGTTCTCTTTGCTCCTGGTAGT
GTTTCCACTGATGCCTGTTGTAGGACAGAAGCCAGACATCTCTGTGGTAATGGGAGCAGGCTTGCTGGTTCTTCTTCTGT
CCCTGTTTGTTGTGACATCATATATAAAAAGAAAAGATAATCTCGATGGAGAACTATTTTTGTATCTGCTACAGATACTG
AGCATCATGCTTTCCATGTACACCGTGTATAGCACGCACAGTAGTCTGCAGCGGAAACAAGGACTACCCTTTCTTAATCA
GACCATTAGCTGGATCATATTAGCCTCTTCCTTCATCCTGCCACTTCTGAGTCCCACCATCCTCTTCGAGCGGTTGTTCA
GCATACTCCTTTCCTTGATGTCCACCTACCTGCTTCTAAGCACAGGGTATGAAGCTCTCTTCCCATTAGTGCTGTCATGT
TTGATGTTCATCTGGATACACATGGAACAAGAAACCCTGCAACAATCTGGCTTTTCCTGTAAACAGAAGGTCAACAGTAT
CCAGTTTGCCTACAATATTGATATAACTCAGTATCGAAAGCTCTATCTCGACGACATCCATAGGGCCTTTTTCCTTGTTT
TCTTCTTACTGACAGCATTTTTTGGAACTGGGAATATAGCTTCTATTAACAGCTTTGATCTTGCTTCAGTCTATTGCTTT
GTGACGGTGTTTAGTCCTTTTGTGATGGGAACCCTGATGATGTGGAAGATTTTAATCCCCTTTGTACTTGTGATGTGTGC
TTTTGAAGCAGTTCAGTTAACTACCCAGCTGTCATCAAAAAGCCTTTTTCTCATGGTTCTCGTCATATCAGACATCATGG
CTTTGCACTTTTTCTTCTTGGTCCAGGATTATGGCAGCTGGCTTGATATTGGAACA
ORF - retro_eeur_583 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
98.94 % |
Parental protein coverage: |
53.03 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | ISLCKELIRLALEGLSYYHTYDRFFLGITVVLGFVGWTSYASLLIIKSHSNLTRGGSNKIKKPNHLLTCT |
| ISLCKELIRLALEGLSYYHTYDRFFLGITVVLGFVGWTSYASLLIIKSHSNLTRGGSNKIKKPNHLLTCT |
Retrocopy | ISLCKELIRLALEGLSYYHTYDRFFLGITVVLGFVGWTSYASLLIIKSHSNLTRGGSNKIKKPNHLLTCT |
|
Parental | FVAVGIAIAFFLLIQSCPWTYYVYCLLPVPIWHALLSEFPVIEDLVKSLLTFPPGQFIGSLLVFGLGLEI |
| FVAVGIAIAFFLLIQSCPWTYYVYCLLPVPIWHALLSEFPVIEDLVKSLLTFPPGQFIGSLLVFGLGLEI |
Retrocopy | FVAVGIAIAFFLLIQSCPWTYYVYCLLPVPIWHALLSEFPVIEDLVKSLLTFPPGQFIGSLLVFGLGLEI |
|
Parental | LVLSFFYRYMLTAGLTAFAGWPFVTQLWTRAKSTSLSWTLFSLLLAVFPLMPVVGRKPDISVVMGAGLLV |
| LVLSFFYRYMLTAGLTAFAGWPFVTQLWTRAKSTSLSWTLFSLLL.VFPLMPVVG.KPDISVVMGAGLLV |
Retrocopy | LVLSFFYRYMLTAGLTAFAGWPFVTQLWTRAKSTSLSWTLFSLLLVVFPLMPVVGQKPDISVVMGAGLLV |
|
Parental | LLLSLFVVTSYIKRKDNLDGELFLYLLQILSIMLSMYTVYSTHSSLQRKQGLPLLNQTISWIILASSFIL |
| LLLSLFVVTSYIKRKDNLDGELFLYLLQILSIMLSMYTVYSTHSSLQRKQGLP.LNQTISWIILASSFIL |
Retrocopy | LLLSLFVVTSYIKRKDNLDGELFLYLLQILSIMLSMYTVYSTHSSLQRKQGLPFLNQTISWIILASSFIL |
|
Parental | PLLSPTILFERLFSILLSLMSTYLLLSTGYEALFPLVLSCLMFIWIHMEQETLQQSGFSCKQKVNSIQFA |
| PLLSPTILFERLFSILLSLMSTYLLLSTGYEALFPLVLSCLMFIWIHMEQETLQQSGFSCKQKVNSIQFA |
Retrocopy | PLLSPTILFERLFSILLSLMSTYLLLSTGYEALFPLVLSCLMFIWIHMEQETLQQSGFSCKQKVNSIQFA |
|
Parental | YNIDITQYRKLYLDDIRRAFFLVFFLVTAFFGTGNIASINSFDLASVYCFVTVFSPFVMGTLMMWKILIP |
| YNIDITQYRKLYLDDI.RAFFLVFFL.TAFFGTGNIASINSFDLASVYCFVTVFSPFVMGTLMMWKILIP |
Retrocopy | YNIDITQYRKLYLDDIHRAFFLVFFLLTAFFGTGNIASINSFDLASVYCFVTVFSPFVMGTLMMWKILIP |
|
Parental | FVLVMCAFEAVQLTTQLSSKSLFLMVLVISDIMALHFFFLVQDYGSWLDIGT |
| FVLVMCAFEAVQLTTQLSSKSLFLMVLVISDIMALHFFFLVQDYGSWLDIGT |
Retrocopy | FVLVMCAFEAVQLTTQLSSKSLFLMVLVISDIMALHFFFLVQDYGSWLDIGT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
2 .09 RPM |
9 .99 RPM |
SRP017611_kidney |
6 .19 RPM |
14 .44 RPM |
SRP017611_liver |
2 .09 RPM |
7 .56 RPM |
Erinaceus europaeus was not studied using ChIP-Seq data.
Erinaceus europaeus was not studied using EST data.
Erinaceus europaeus was not studied using FANTOM5 data.
retro_eeur_583 was not experimentally validated.
Retrocopy orthology:
Erinaceus europaeus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.