RetrogeneDB ID: | retro_eeur_648 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_374626:44822..45123(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSU72 | ||
Ensembl ID: | ENSEEUG00000010799 | ||
Aliases: | None | ||
Description: | SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25016] |
Percent Identity: | 81.55 % |
Parental protein coverage: | 66.89 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | PLRVAVVCSSNQNR-SMEAHNILSKRGFSVRSFGTGTHVK-LPGPAPDKPN-VYDFKTTYDQMYNDLLRK |
PL.VAVV.SSNQNR.SMEAHNILSK.GFSV.SF.TGTHVK.LPGPAP.K.N.V.DFKTTYDQMYN..LRK | |
Retrocopy | PLMVAVVYSSNQNR<SMEAHNILSK*GFSVLSFATGTHVKKLPGPAPNKLN>V*DFKTTYDQMYNNILRK |
Parental | DKELYTQNGI-LHMLDRNKRIKPRPERFQNCRD |
DKELY..NGI.L.MLDRNKRIKPRPERFQN.R. | |
Retrocopy | DKELYS*NGI>L*MLDRNKRIKPRPERFQNSRN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 19 .98 RPM |
SRP017611_kidney | 0 .00 RPM | 18 .75 RPM |
SRP017611_liver | 0 .00 RPM | 12 .22 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013736 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000010799 | 1 retrocopy |
retro_eeur_648 ,
|
Felis catus | ENSFCAG00000003318 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011016 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000014394 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000009747 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000010136 | 3 retrocopies |