RetrogeneDB ID: | retro_eeur_658 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_377253:64919..65167(+) | ||
Located in intron of: | ENSEEUG00000009921 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C11orf1 | ||
Ensembl ID: | ENSEEUG00000009977 | ||
Aliases: | None | ||
Description: | chromosome 11 open reading frame 1 [Source:HGNC Symbol;Acc:1163] |
Percent Identity: | 87.06 % |
Parental protein coverage: | 55.63 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MTASICPCYSGLLCHRQSLACYLVNPHYGSLINADGHAEVWTDWNNMSKFFQYGWRCNTNENAYSD-RTL |
MTASICPC.SG.L..R.SLACYLVNPHYGSLINA.GHAEV.TDWN.MSKFFQYGWRC.T.ENAYSD.RTL | |
Retrocopy | MTASICPCCSGYL-QR*SLACYLVNPHYGSLINANGHAEV*TDWNDMSKFFQYGWRCTTTENAYSD<RTL |
Parental | VGNWNQERYDLKNIV |
VGNWNQERYDLKNIV | |
Retrocopy | VGNWNQERYDLKNIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .06 RPM |
SRP017611_liver | 0 .32 RPM | 4 .98 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003039 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000021163 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009977 | 1 retrocopy |
retro_eeur_658 ,
|
Mus musculus | ENSMUSG00000037971 | 1 retrocopy |