RetrogeneDB ID: | retro_eeur_78 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_4669:6533..6794(+) | ||
Located in intron of: | ENSEEUG00000012253 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ANAPC16 | ||
Ensembl ID: | ENSEEUG00000014902 | ||
Aliases: | None | ||
Description: | anaphase promoting complex subunit 16 [Source:HGNC Symbol;Acc:26976] |
Percent Identity: | 88.51 % |
Parental protein coverage: | 79.09 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SVSDLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLAGLVEELEADE |
SVSDLAPPRKA.FTYPKGAGEMLEDG.E.FLCESVFSYQVAS.LKQVKHDQQV..MEKL.GLVEELEADE | |
Retrocopy | SVSDLAPPRKAHFTYPKGAGEMLEDGPE*FLCESVFSYQVASILKQVKHDQQVVWMEKLVGLVEELEADE |
Parental | WRFKPIEQLLGFTPSSG |
W.FKPI.Q.LGFTPSSG | |
Retrocopy | WQFKPIKQRLGFTPSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 14 .34 RPM |
SRP017611_kidney | 0 .00 RPM | 20 .44 RPM |
SRP017611_liver | 0 .00 RPM | 8 .04 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000014902 | 1 retrocopy |
retro_eeur_78 ,
|
Felis catus | ENSFCAG00000010368 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000004229 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016767 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008215 | 3 retrocopies |