RetrogeneDB ID: | retro_etel_1104 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_212241:7564..7856(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRAPPC6B | ||
Ensembl ID: | ENSETEG00000013828 | ||
Aliases: | None | ||
Description: | trafficking protein particle complex 6B [Source:HGNC Symbol;Acc:23066] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 66.22 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | FTKDTARFKDELDIMKFICKDFWT-TVFKKQID-NLRTNHQ-GIYVLQDNKFR-LLTQMSAGKQYLEHAS |
FTKD..R.K.E.DIM.FIC.DFWT.T.FKKQI...LRTNHQ.G..V.QDNK...LLTQMS.GK.YLE.A. | |
Retrocopy | FTKDIVRLKNESDIMRFICEDFWT>TPFKKQIN<HLRTNHQ<GHDVIQDNKLV<LLTQMSTGKPYLEYAA |
Parental | KYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPA |
...AF.CGLI..GLS.L..KS.VTA.VSSMPA | |
Retrocopy | RHFAFRCGLI*SGLSHLVMKSLVTAAVSSMPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000013828 | 1 retrocopy |
retro_etel_1104 ,
|
Myotis lucifugus | ENSMLUG00000002627 | 2 retrocopies | |
Mus musculus | ENSMUSG00000020993 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002171 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000001400 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002897 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000003331 | 1 retrocopy |