RetrogeneDB ID: retro_etel_1291

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_24280:3894..4539(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000002062
• Aliases: None
• Description: None

Sequence

>retro_etel_1291
GGGCTCTGTGACCTCTGCCCCGGCCTGGAGAAACAACTGCTCGTGTTCCCGGGACACAGGTGCGGCAGTCTGCAGCTGGT
GGACCTGGCGCACGCAAACCCTGGGACTTCGTCCGCGCCGTCTGCCATCCACGCGCATCAGAGCGAGCTAGCCTGCGTGT
CCCTGAACCAGCCAGGCACGGTAGTGGCCTCCGCCTCCCAGAAGGGCACCCTTATTCGTCTTTTTGACACACAGTCCAAG
GAGAAACTGGTGGAACTGCGCCGAGGCGCCGACCCGGCCACCATTTACTGCATCAACTTCAGCCATGACTCCTCCTTCCT
CTGCGCCTCCAGCGATAAGGGCACGGTCCACATCTTTGCTCTCAAGGACACCCGCCTCAACCGCCGCTCAGCGCTGGCTC
GTGTGGGCAAGGTGGGGCCTCTCATTGGGCAGTACGTGGACTCTCAGTGGAGCCTGGCAAGCTTCACGGTGCCTGCAGAG
TCTGCCTGCATCTGCGCCTTTGGACGCAATACTTCCCAGAATGTCAACTCCGTCATTGCCATCTGTGTAGATGGGACGTT
CCACAAATACGTCTTCACTCCGAATGGAAACTGCAACAGGGAGGCTTTTGAGGTGTACCTTGACATCTGTGATGATGATG
ACTTT

Alignment

ORF - retro_etel_1291 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.56 %
• Parental protein coverage: 65.95 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTINAHQSDIACVSLNQPGTVVASASQKGT
          GLCDLCP.LEKQLLVFPGH.CGSLQLVDLA...PGTSSAP..I.AHQS..ACVSLNQPGTVVASASQKGT
Retrocopy GLCDLCPGLEKQLLVFPGHRCGSLQLVDLAHANPGTSSAPSAIHAHQSELACVSLNQPGTVVASASQKGT

Parental  LIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARVGKVGP
          LIRLFDTQSKEKLVELRRG.DPAT.YCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARVGKVGP
Retrocopy LIRLFDTQSKEKLVELRRGADPATIYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARVGKVGP

Parental  MIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCNREAFDVYLDIC
          .IGQYVDSQWSLASFTVPAESACICAFGRNTS.NVNSVIAICVDGTFHKYVFTP.GNCNREAF.VYLDIC
Retrocopy LIGQYVDSQWSLASFTVPAESACICAFGRNTSQNVNSVIAICVDGTFHKYVFTPNGNCNREAFEVYLDIC

Parental  DDDDF
          DDDDF
Retrocopy DDDDF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1291 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000002062	3 retrocopies	retro_etel_1291 , retro_etel_688, retro_etel_712,
Gorilla gorilla	ENSGGOG00000000589	1 retrocopy	retro_ggor_2075,
Macaca mulatta	ENSMMUG00000010620	1 retrocopy	retro_mmul_1916,
Pongo abelii	ENSPPYG00000020333	1 retrocopy	retro_pabe_2481,