RetrogeneDB ID: | retro_etel_712 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_151545:1107..1753(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000002062 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.19 % |
Parental protein coverage: | 65.34 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | CDLCPSLEKQLLVFPGHKCGSLQLVDLA-STKPGTSSA-PFTINA-HQSDIACVSLNQPGTVV-ASASQK |
CDLCPSLEKQL.VFPGH...S.QLVDL..ST.PG.SSA.PFTI.A.HQ...ACVSLN.PGTVV..SASQK | |
Retrocopy | CDLCPSLEKQLFVFPGHTGRSRQLVDLG>STNPGPSSA>PFTIHA>HQIELACVSLNPPGTVV>SSASQK |
Parental | GTLIRLF-DTQSKEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARVGK |
GTL...F..T...E......R..DPAT.YCINFSHDSSFLCASSDKGTVHIFALKDT.LNRRSALARVGK | |
Retrocopy | GTLYSSF*HTVQRETGRTAPRRRDPATIYCINFSHDSSFLCASSDKGTVHIFALKDTLLNRRSALARVGK |
Parental | VGPMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCNREAFDVYL |
V.P.IGQYVDSQWSLASFTVPAESACICAFGRNTS.NVNSVIAICVDGTFHKYVFTP.GNCNREAF.VYL | |
Retrocopy | VEPLIGQYVDSQWSLASFTVPAESACICAFGRNTSQNVNSVIAICVDGTFHKYVFTPNGNCNREAFEVYL |
Parental | DICDDDDF |
DICDDDDF | |
Retrocopy | DICDDDDF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000002062 | 3 retrocopies |
retro_etel_1291, retro_etel_688, retro_etel_712 ,
|
Gorilla gorilla | ENSGGOG00000000589 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010620 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020333 | 1 retrocopy |