RetrogeneDB ID: retro_etel_1330

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_247835:2903..3158(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000020301
• Aliases: None
• Description: None

Sequence

>retro_etel_1330
AAGACTGCTAGCATGCCCATGGTAACTTGAAGGCTAAGAGGTGCTGACATAAACCCTGTTTGTCGAATCTGATCCGTCTA
CCAGATGTCTGGATGGAAAAAACAGGGAAAGGGGTTCTGCTTCCTTCGTGAAGTACAAAAATTGCCGGAAATTCTGGAAT
TCTATGCTGGTTCAGAGAAGACAGGAGTAGAGCCACCTATGCCTACAGCATCAGAAAGAGAGGAAATTTTGGAAGCTATG
GGGAAAATGCCCTAT

Alignment

ORF - retro_etel_1330 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75. %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  KTASMPMVTRRLRDPDINP-CLS-ESDLSTRCLDENNYNRERCSAYFLKYKNCRRFWNSILVERRQK-GV
          KTASMPMVT.RLR..DINP.CLS.ESD.STRCLD..N..RER.SA.F.KYKNCR.FWNS.LV..R...GV
Retrocopy KTASMPMVT*RLRGADINP<CLS<ESDPSTRCLDGKN--RERGSASFVKYKNCRKFWNSMLV-QRRQ<GV

Parental  KPPMPTASERDEILKAMGKMPY
          .PPMPTASER.EIL.AMGKMPY
Retrocopy EPPMPTASEREEILEAMGKMPY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1330 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000007055	1 retrocopy	retro_cfam_1197,
Echinops telfairi	ENSETEG00000020301	2 retrocopies	retro_etel_1330 , retro_etel_888,
Monodelphis domestica	ENSMODG00000024930	1 retrocopy	retro_mdom_1124,
Ictidomys tridecemlineatus	ENSSTOG00000002724	1 retrocopy	retro_itri_278,