RetrogeneDB ID: | retro_etel_1416 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_262522:7785..8307(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000011536 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COMMD8 | ||
Ensembl ID: | ENSETEG00000020257 | ||
Aliases: | None | ||
Description: | COMM domain containing 8 [Source:HGNC Symbol;Acc:26036] |
Percent Identity: | 59.66 % |
Parental protein coverage: | 94.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | WRLQKVPAELGPQLLHKM-IDGMCGRAYPLYQDYQSVWDSTEWIHVREDITTFFKDAVGKSLSDEEISQQ |
W.LQ..PAELGP.LLHK...DGMCG.A.PLY..YQS.W.STEWIHV.E....FFK.A.G...SDE..S.. | |
Retrocopy | WQLQQLPAELGPHLLHKL>TDGMCGLAAPLYPHYQSIWGSTEWIHVLEASAPFFKAALGRNVSDEKLSPK |
Parental | LNQLHSFHQEAIMKCLRSRKDEIKQALLGEIAAISSAQLQDFDWQLKLALSSDKIAALQMPLLTLHLDVK |
.NQL.S.HQEAI..CL.S..DEIK...LGEI..ISSAQ..DFDWQLKLALSS.KI...QMPLL.LHL..K | |
Retrocopy | WNQLNSLHQEAIVTCLKSKTDEIKGPRLGEIVGISSAQVPDFDWQLKLALSSVKIVT*QMPLLNLHLHLK |
Parental | EKGA-ATPCCVEMSREELQSLIESLEAANKEVLQVQ |
..GA....C..E...E.LQ....SL.AA....LQV. | |
Retrocopy | DVGA<SEVCSAEVRQEGLQGPLKSLAAASLVALQVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001348 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000020257 | 3 retrocopies |
retro_etel_1416 , retro_etel_182, retro_etel_210,
|
Felis catus | ENSFCAG00000023811 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011376 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021777 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000000739 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001221 | 1 retrocopy |