RetrogeneDB ID: | retro_etel_156 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_2708:386273..386770(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000005406 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.52 % |
Parental protein coverage: | 84.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | KRLTEEREKKDGKPVQPVKRELLRHRDYKVDLESKLGKTIVITKT-TPQSEMGGYYCNVCDCVVKDSINF |
.R....R.KK.GKP.QPVKRELLRHRD.KVDLESKLGKTI.ITKT.TPQSEMGGY.C..CDCVV..SI.F | |
Retrocopy | RRGSWKRDKKAGKPAQPVKRELLRHRDCKVDLESKLGKTIIITKT<TPQSEMGGYHCSFCDCVVRGSIHF |
Parental | -LDHINGKKHQRNLGM-SMPVERSTLDHAKKRFEVHKKKMEEKQK-DYDF-ERMKELREEEEKAKAYKKE |
..DHINGKKHQR.LG.....V.RSTLD..KKRFE....KMEEKQK.D.DF.ERMKELREEEEKA.....E | |
Retrocopy | <SDHINGKKHQRPLGI<IWRVDRSTLDPVKKRFEIN-RKMEEKQK<DGDFEERMKELREEEEKASLQERE |
Parental | KQKEKKRRAEEDLTFEEEDEMAAVMGFSGFGST |
...E.K.RAE.DLT.E.E.E.AAV.GFSGFGST | |
Retrocopy | TE-EEKGRAEQDLTLEQEEERAAVRGFSGFGST |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000005907 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007795 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000016231 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000014559 | 8 retrocopies | |
Echinops telfairi | ENSETEG00000005406 | 2 retrocopies |
retro_etel_156 , retro_etel_882,
|
Ficedula albicollis | ENSFALG00000008988 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000017525 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000011269 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000009717 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002025 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001777 | 4 retrocopies |