RetrogeneDB ID: | retro_etel_1804 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_299332:111874..112140(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHIC2 | ||
Ensembl ID: | ENSETEG00000004296 | ||
Aliases: | None | ||
Description: | cysteine-rich hydrophobic domain 2 [Source:HGNC Symbol;Acc:1935] |
Percent Identity: | 54.44 % |
Parental protein coverage: | 54.6 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ADFDIYEEEEDEERALEELLLYSPDQVVVLGSAHVSVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNS |
A.F....E.EDEE..L.E.LL.....VV..GS.HV.VF.LS.K.ESE.PSS..GKVAP.EFK.SINR..S | |
Retrocopy | ANFHAV*EDEDEEGTLKEQLLRYWLIVVIRGSGHVTVFRLSHKLESERPSS*IGKVAPDEFKSSINRGSS |
Parental | CLK-KNLPINVRWLLCGCLC |
.L..KNLP...R....G..C | |
Retrocopy | GLT<KNLPVRSRTWTQGWDC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000004296 | 1 retrocopy |
retro_etel_1804 ,
|
Latimeria chalumnae | ENSLACG00000006603 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012248 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006382 | 1 retrocopy |