RetrogeneDB ID: | retro_etel_1866 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_309276:46923..47335(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NPC2 | ||
Ensembl ID: | ENSETEG00000003719 | ||
Aliases: | None | ||
Description: | Niemann-Pick disease, type C2 [Source:HGNC Symbol;Acc:14537] |
Percent Identity: | 80.43 % |
Parental protein coverage: | 95.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MRALATAILLLALNSA-SIAEPVGFRDCGSVVGTVQEVNVSPCPNQPCQLIKGQSYSVNVTFTSKTSSNN |
.RALATAILLLALN...SIAEPV.FRDCGS.VGTVQEVNVSPCPNQ.CQL.KGQSYSV.VTFTS.T.S.N | |
Retrocopy | LRALATAILLLALNAG>SIAEPVRFRDCGSMVGTVQEVNVSPCPNQTCQLTKGQSYSVEVTFTSETNSHN |
Parental | STAVVHGIVLGVPLPFAIPVSDGCKSGISCPIQKGKCYNYLNKLPVKSEYPSXXL-VKGRLLDGNQET |
STAVVHGIVLGVP.PFA.PVSDGCKSGI.CPIQKGK.YNYLNKLPVKSEYPS..L.VK..L.D..... | |
Retrocopy | STAVVHGIVLGVPFPFAMPVSDGCKSGIICPIQKGKSYNYLNKLPVKSEYPSVKLVVKWELVDDKKQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000016932 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009488 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000003719 | 2 retrocopies |
retro_etel_1610, retro_etel_1866 ,
|
Loxodonta africana | ENSLAFG00000002876 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013025 | 1 retrocopy |