RetrogeneDB ID: | retro_etel_1874 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_310110:163778..164445(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TWISTNB | ||
Ensembl ID: | ENSETEG00000019157 | ||
Aliases: | None | ||
Description: | TWIST neighbor [Source:HGNC Symbol;Acc:18027] |
Percent Identity: | 93.27 % |
Parental protein coverage: | 65.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IEADFVIFCPEPGQKLVGTVNKVSSSHIGCLVHGCFNASIPKPEQMPPEQWQTLEISVGDELEFEVFRLD |
IEADFVIFCPEPGQKLVGTVNKVSSSHIGCLVHGCFNASIPKPEQMPPEQ.QTLEISVGDELEFEVFRLD | |
Retrocopy | IEADFVIFCPEPGQKLVGTVNKVSSSHIGCLVHGCFNASIPKPEQMPPEQRQTLEISVGDELEFEVFRLD |
Parental | SDAAGVFCIRGKLNVASLQAKCSQVSEEATETTTEETVENPPQKKKKNLETSREGEAAAELVAVLVKGDA |
SDAAGVFCIRGKLNVASLQAKCSQVSEEATETTTEETVENPPQKK.K.LETSREGEAAAELVAVLVKGDA | |
Retrocopy | SDAAGVFCIRGKLNVASLQAKCSQVSEEATETTTEETVENPPQKKQKGLETSREGEAAAELVAVLVKGDA |
Parental | GLQTNGSAEGLGGEQPQEKKKERKKRKSREAPDPDPVLPGSDSSGYQSDRKKKKKKRKYEEAAVSPNVEH |
GLQTNGSAEGLGGEQP...........SREAPDPDPVLPGSDSSGYQSDRKKKKKKRKYEEAAVSPNVEH | |
Retrocopy | GLQTNGSAEGLGGEQPXXXXXXXXXXXSREAPDPDPVLPGSDSSGYQSDRKKKKKKRKYEEAAVSPNVEH |
Parental | SP-KRKGNRNLPE |
SP.KRKGNRNLPE | |
Retrocopy | SP>KRKGNRNLPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000019157 | 1 retrocopy |
retro_etel_1874 ,
|
Microcebus murinus | ENSMICG00000017730 | 2 retrocopies | |
Mus musculus | ENSMUSG00000020561 | 1 retrocopy |