>retro_mmus_1516
AACCTTTTAGGTGTTCCTACTGCATATGATAACATCAGAGTTGTGGGTGAACTAGGAGATATTTATGATGATCAAGGACA
CATTCATCTTAACATTGAAGCAGATTTTGTTATTTTCTGCCCTGAGCCTGGGCAGACGTTAATGGGTACAGTTAATAAAG
TATCGTCTAGCCATATTGGCTGTCTAGTCCATGGATGTTTTAACGCCTCTATCCCTAAGCCTGAGCAGATGTCATATGAG
GAGTGGCAAACATTGGAGATACATGTAGGCGATGAACTGGAATTTGATGTATTTCGCTTAGATTCAGATTCTGCTGGAGT
ATTCAGCATTCGAGGAAAACTGAATACCACCAGTTTGCAACTTAAGCGCTCTGTAGTTTCTGAAGACGTAGCAGAAACTG
TCATTGAAGAGGTTGTTGAAAAAACTCCAAAGAAGAAAAAAAAGAAGAAGAAAGACAAAGATACAGACACATGTGGAACA
GTTGATAGTGCTACAGAGGTAGCAGATGTTACAGATGTCACGCCACAGGAAGAAACAGACATACCATGTAGTGATAATGT
GAATGACTTCTTTGAGGAAGAGCCAAAGAAGAAGAAAAAGAAGAAGAAAAGGCACCAGAAAGATCAGGACCCCATTTTCC
AAGCCAGTGACTCCAGTGGCTACCAGAGTGACCATAACAAGAAAAAAAAGAAAAGAAAGCACGGTGAAGAGGCTAACTTT
GAGTCACCTAAGAAGAGACAG
ORF - retro_mmus_1516 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
80.16 % |
Parental protein coverage: |
74.55 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | SLLGVPIAYDNIRVVGELGDIYDDQGHIHLNIEADFVIFCPEPGQTLMGTVNKVSSSHIGCLVHGCFNAS |
| .LLGVP.AYDNIRVVGELGDIYDDQGHIHLNIEADFVIFCPEPGQTLMGTVNKVSSSHIGCLVHGCFNAS |
Retrocopy | NLLGVPTAYDNIRVVGELGDIYDDQGHIHLNIEADFVIFCPEPGQTLMGTVNKVSSSHIGCLVHGCFNAS |
|
Parental | IPKPEQMSYEEWQTLEIHVGDELEFDVFRLDSDSAGVFCIRGKLSTTSLQLKHSAVSEDVAET-VVEEVV |
| IPKPEQMSYEEWQTLEIHVGDELEFDVFRLDSDSAGVF.IRGKL.TTSLQLK.S.VSEDVAET...E.V. |
Retrocopy | IPKPEQMSYEEWQTLEIHVGDELEFDVFRLDSDSAGVFSIRGKLNTTSLQLKRSVVSEDVAETVIEEVVX |
|
Parental | EKTPKKKKKKKDKDTDTCGTVDSVTEVADVTDVTPQEETDIPCSDNVNDFFEEEPKKKKKKKKRHQEDQD |
| ..............TDTCGTVDS.TEVADVTDVTPQEETDIPCSDNVNDFFE................QD |
Retrocopy | XXXXXXXXXXXXXXTDTCGTVDSATEVADVTDVTPQEETDIPCSDNVNDFFEXXXXXXXXXXXXXXXXQD |
|
Parental | PIFQASDSSGYQSDHNKKKKKRKHSEEANFESPKKRQ |
| PIFQASDSSGYQSDHNK......H.EEANFESPKKRQ |
Retrocopy | PIFQASDSSGYQSDHNKXXXXXXHGEEANFESPKKRQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .02 RPM |
5 .86 RPM |
SRP007412_cerebellum |
0 .04 RPM |
5 .25 RPM |
SRP007412_heart |
0 .00 RPM |
3 .70 RPM |
SRP007412_kidney |
0 .13 RPM |
5 .51 RPM |
SRP007412_liver |
0 .03 RPM |
5 .52 RPM |
SRP007412_testis |
0 .00 RPM |
3 .38 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_1516 was not detected
No EST(s) were mapped for retro_mmus_1516 retrocopy.
No TSS is located nearby retro_mmus_1516 retrocopy 5' end.
retro_mmus_1516 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_1516 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.