RetrogeneDB ID: | retro_etel_1984 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_321803:3594..4174(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000010897 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GNB1 | ||
Ensembl ID: | ENSETEG00000020012 | ||
Aliases: | None | ||
Description: | guanine nucleotide binding protein (G protein), beta polypeptide 1 [Source:HGNC Symbol;Acc:4396] |
Percent Identity: | 80.79 % |
Parental protein coverage: | 56.76 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 10 |
Parental | SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE |
SCCRFLDDNQIVTS.GDTTCALWDIETGQQT.TFTG..T.DVMSLSLAPDTRLFVSGACDASA.LWDVRE | |
Retrocopy | SCCRFLDDNQIVTSCGDTTCALWDIETGQQTATFTG<NTRDVMSLSLAPDTRLFVSGACDASAMLWDVRE |
Parental | GMCRQT-FTGHESDINA-ICF-FPNGNAFATGSDDATC-RLFDLRADQE-LMT-YSHDNIICGITSVSFS |
GMCRQT.FT.HESDI.A.ICF.FPNGNAFA.G...AT..RLFDLRADQE.LMT.YSH...ICGIT..... | |
Retrocopy | GMCRQT>FTAHESDISA>ICF>FPNGNAFANGLKNATW>RLFDLRADQE>LMT>YSHEDSICGITCLLLQ |
Parental | K-SGRLLLAGYDD-FNCNVWDALKADRAGVLAGHDNRVSCL-GVTDDGMAVATGSWDSFLKIW |
....RLL.AGYDD..NC.VWDALKA.RAGVLAGHD.RVSC..GVTDDGMAVATGSWDSFLKIW | |
Retrocopy | E>GRRLL-AGYDD<LNCSVWDALKAQRAGVLAGHDHRVSCV<GVTDDGMAVATGSWDSFLKIW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000019216 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000020012 | 1 retrocopy |
retro_etel_1984 ,
|
Rattus norvegicus | ENSRNOG00000016638 | 1 retrocopy |