>retro_rnor_1660
GGCCTGGATAACATCTGCTCCATTTACAATCTGACAACTCGTGAAGGAAATGTGCGTGTGAGTCGTGAGCTGGCAGGACA
TACAGGTTATCTATCCTGTTGCCGGTTCCTGGATGACAATCAGATAGTTACCAGTTCTGGAGACACCACATGTGCCCTGT
GGGACATCGAGACTGGCCAGCAGACAACCACGTTTACTGGACACACTGGAGATGTCATGAGCCTGTCTCTTGCTCCTGAC
ACCAGACTGTTTGTCTCTGGTGCTTGCGATGCTTAGGCCAAGCTCTGGGATGTCCGAGAAGGGATGTGCCGGCAGACCTT
TGCAGGACACGAGTCTGACATCAATGCCATATGTTTCTTTCCCAATGGCAATGCCTTTGCCACTGGCTCAGACGATGCTA
CATGCAGGCTGTTTGACCTTCGTGGAGACCAGGAGCTCATGACCTACTCCCATGACAACATTATCTGTGGTATCACATCT
GTTTCCTTCTCCAAGAGTGGCCGCCTCCTCCTCGCTGGCTATAACGACTTCAACTGTAATGTCTGGGATGCACTCAAAGC
TGACAGAGCAGGTGTCCTAGCTGGACATGACAACCGAGTCAGCTGCTTGGGGGTGAGTGATGATGGCATGGCTGTGGCAA
CAGGATCCTGGGACAGCTTCCTCAAGATCTGGAAC
ORF - retro_rnor_1660 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.33 % |
Parental protein coverage: |
66.18 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG |
| GLDNICSIYNL.TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG |
Retrocopy | GLDNICSIYNLTTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG |
|
Parental | DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL |
| DVMSLSLAPDTRLFVSGACDA.AKLWDVREGMCRQTF.GHESDINAICFFPNGNAFATGSDDATCRLFDL |
Retrocopy | DVMSLSLAPDTRLFVSGACDA*AKLWDVREGMCRQTFAGHESDINAICFFPNGNAFATGSDDATCRLFDL |
|
Parental | RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM |
| R.DQELMTYSHDNIICGITSVSFSKSGRLLLAGY.DFNCNVWDALKADRAGVLAGHDNRVSCLGV.DDGM |
Retrocopy | RGDQELMTYSHDNIICGITSVSFSKSGRLLLAGYNDFNCNVWDALKADRAGVLAGHDNRVSCLGVSDDGM |
|
Parental | AVATGSWDSFLKIWN |
| AVATGSWDSFLKIWN |
Retrocopy | AVATGSWDSFLKIWN |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .58 RPM |
287 .80 RPM |
SRP017611_kidney |
0 .28 RPM |
87 .51 RPM |
SRP017611_liver |
0 .07 RPM |
33 .01 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_1660 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_1660 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_1660 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.