RetrogeneDB ID: | retro_etel_2047 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_40846:1560..2316(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000019377 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HIAT1 | ||
Ensembl ID: | ENSETEG00000005809 | ||
Aliases: | None | ||
Description: | hippocampus abundant transcript 1 [Source:HGNC Symbol;Acc:23363] |
Percent Identity: | 92.19 % |
Parental protein coverage: | 51.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LKKVGQDSIVLLICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSLLMR |
LKKVGQD.IVLLICI.VFLSYLPEAGQYSS.FLYLRQIMKFSPESVAAFIAVLGILSIIAQT.VLSL.MR | |
Retrocopy | LKKVGQDNIVLLICIKVFLSYLPEAGQYSSLFLYLRQIMKFSPESVAAFIAVLGILSIIAQTVVLSLPMR |
Parental | SIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVSRTADADQQGVVQGMITG |
SIGNK.TILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVSRTADADQQGVVQGMITG | |
Retrocopy | SIGNKSTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVSRTADADQQGVVQGMITG |
Parental | IRGLCNGLGPALYGFIFYIFHVELKELPITGTDLGTNTSP-QHHFEQNSIIPGPP-FLFGACSVLLALLV |
IRGLCNGLGPALYGFIFYIFHVELKELPITGTDLGTNTSP.Q.HFE.....P..P.FLFGAC.VLLALL. | |
Retrocopy | IRGLCNGLGPALYGFIFYIFHVELKELPITGTDLGTNTSP<QQHFEHHH--PWAP>FLFGACLVLLALLI |
Parental | ALFIPEHTNLSLRSSSWKKHCGGHSHPHSTQAPGEAKEPLLQDTNV |
ALFIPEH.NLSLRSSSWKKHCG.HSHPHSTQAPGEAKEPLLQDTNV | |
Retrocopy | ALFIPEHINLSLRSSSWKKHCGAHSHPHSTQAPGEAKEPLLQDTNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010468 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005809 | 1 retrocopy |
retro_etel_2047 ,
|
Myotis lucifugus | ENSMLUG00000002112 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000007819 | 1 retrocopy | |
Drosophila melanogaster | FBgn0035400 | 1 retrocopy |