RetrogeneDB ID: | retro_etel_2100 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_56004:941..1236(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000017968 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM160 | ||
Ensembl ID: | ENSETEG00000017997 | ||
Aliases: | None | ||
Description: | transmembrane protein 160 [Source:HGNC Symbol;Acc:26042] |
Percent Identity: | 78.22 % |
Parental protein coverage: | 69.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | PFVPEHSPRAGVSPPPVSELDRADAWLLRKAHETAFLSWFRNGLLASGIG-VISFMQSDMGREAAYGFFL |
P..P.HSPRA.VSPP.VSE.DRADAWL.RKA.ETAFL.WFRNGLL.SG.G.VI.FM..D.GR.AAYGFFL | |
Retrocopy | PLAPAHSPRARVSPPAVSEPDRADAWLPRKAQETAFLWWFRNGLLVSGVG<VIPFMHRDLGRKAAYGFFL |
Parental | LGGLCVVWGSASYAV-GLAALRGPMQLSLGG |
.GGL.VVWGSASYAV..LAALRG.MQLSLGG | |
Retrocopy | PGGLGVVWGSASYAV<DLAALRGLMQLSLGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000017997 | 1 retrocopy |
retro_etel_2100 ,
|
Homo sapiens | ENSG00000130748 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013410 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023097 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010166 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011200 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015304 | 1 retrocopy |