RetrogeneDB ID: | retro_ocun_1750 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018844:694220..694718(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM160 | ||
Ensembl ID: | ENSOCUG00000023097 | ||
Aliases: | None | ||
Description: | transmembrane protein 160 [Source:HGNC Symbol;Acc:26042] |
Percent Identity: | 92.17 % |
Parental protein coverage: | 88.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LPPQRPRSGGARGSFAPGHGPRAGASPPPVSELDRADAWLLRKAHETAFLSWFRNGLLASGIGVISFMQS |
L.PQRP.SG.ARGSFAPGHGPRAGASPPPVSELDRADAWLLRKA.ETAFLSWF.NGLLASG.GVISF.Q. | |
Retrocopy | LLPQRPWSGVARGSFAPGHGPRAGASPPPVSELDRADAWLLRKARETAFLSWFLNGLLASGFGVISFVQN |
Parental | DMGREAAYGFFLLGGLCVVWGGASYAVGLAALRGPMQLSVGGAAAGMGAVLAASLLWACAVGLYMGQLEL |
.MGREAAYGFFLLGGLCVVWGGASYAVGLA.LRGP.QLS.GGAAAGMGAVLAASLLWACAVGLYMGQLEL | |
Retrocopy | YMGREAAYGFFLLGGLCVVWGGASYAVGLALLRGPVQLSLGGAAAGMGAVLAASLLWACAVGLYMGQLEL |
Parental | DVELVPEDDGTAAAEGPDEAGRPPPE |
DVELVPE.DGTAAAEGPDEAGRPPPE | |
Retrocopy | DVELVPENDGTAAAEGPDEAGRPPPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .17 RPM | 8 .22 RPM |
SRP017611_kidney | 0 .10 RPM | 11 .55 RPM |
SRP017611_liver | 0 .46 RPM | 3 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000017997 | 1 retrocopy | |
Homo sapiens | ENSG00000130748 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013410 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023097 | 1 retrocopy |
retro_ocun_1750 ,
|
Pongo abelii | ENSPPYG00000010166 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011200 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015304 | 1 retrocopy |