RetrogeneDB ID: | retro_etel_2124 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_68532:2523..3212(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000003450 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP2M1 | ||
Ensembl ID: | ENSETEG00000004759 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 2, mu 1 subunit [Source:HGNC Symbol;Acc:564] |
Percent Identity: | 88.14 % |
Parental protein coverage: | 54.02 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTK |
MIGGLFIYNHKGE.LIS.VY.DDIGRN.VDAFRVNVIHA.QQVR.PVT.IART..FHVKRSNIWLAAVTK | |
Retrocopy | MIGGLFIYNHKGELLISWVYLDDIGRNVVDAFRVNVIHAWQQVRRPVTHIARTNSFHVKRSNIWLAAVTK |
Parental | QNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKS |
QNVNAAMVFEFLYKMCDV.AAYFGKIS.ENIKN.FVLIYELLDEILDFGYPQNSETGA.KT.I.QQGIKS | |
Retrocopy | QNVNAAMVFEFLYKMCDVTAAYFGKISKENIKNSFVLIYELLDEILDFGYPQNSETGARKTII-QQGIKS |
Parental | QHQTKEEQSQITSQVTGQIGWRREGIKYR-RNELFLDVLESVNLLMSPQGEVLSAHVSGRVVMKSYLSGM |
QHQT.EEQSQITSQ.....GW..EG.KYR.RN.LFLDVLESVNLLMSPQG.VLSAHV.GRVVMKSYLSGM | |
Retrocopy | QHQT*EEQSQITSQI----GWHQEGFKYR<RNGLFLDVLESVNLLMSPQGQVLSAHVLGRVVMKSYLSGM |
Parental | PECKFGMNDKIVIEKQGKGTADETSK |
PECKFGMNDKIVIEKQGKGTADETSK | |
Retrocopy | PECKFGMNDKIVIEKQGKGTADETSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012998 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006073 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004759 | 1 retrocopy |
retro_etel_2124 ,
|
Macropus eugenii | ENSMEUG00000002558 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004556 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006101 | 1 retrocopy |