RetrogeneDB ID: | retro_etel_2145 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_75766:279..996(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS35 | ||
Ensembl ID: | ENSETEG00000005034 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein S35 [Source:HGNC Symbol;Acc:16635] |
Percent Identity: | 97.91 % |
Parental protein coverage: | 73.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LEGIKTSRNERLMRRRVLPPRTEKMAVDQDCPSVYPVADRFKPSAVPLPLRMGYPGKRGVPMAKEGNLEL |
LEGIKTSRNERLMRRRVLPPRTEKMAVDQD.PSVYPVA..FKPSAVPLPLRMGYP.KRGVPMAKEGNLEL | |
Retrocopy | LEGIKTSRNERLMRRRVLPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPLRMGYPVKRGVPMAKEGNLEL |
Parental | LKIPNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSSGPSVRNPKARVVTLRV |
LKIPNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSSGPSVRNPKARVVTLRV | |
Retrocopy | LKIPNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDTADYVSSGPSVRNPKARVVTLRV |
Parental | KLSSLNLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLKRQNYDYAMYLLTVLYHESWKTEEWEKSKTE |
KLSSLNLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLKRQNYDYAMYLLTVLYHESWKTEEWEKSKTE | |
Retrocopy | KLSSLNLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLKRQNYDYAMYLLTVLYHESWKTEEWEKSKTE |
Parental | ADMEEYIWENSSSERNVLETLIQIKAAER |
ADMEEYIWENS.SERNVLETLIQIKAAER | |
Retrocopy | ADMEEYIWENSPSERNVLETLIQIKAAER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000005034 | 1 retrocopy |
retro_etel_2145 ,
|
Loxodonta africana | ENSLAFG00000010490 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016214 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010630 | 2 retrocopies |