RetrogeneDB ID: | retro_etel_220 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_3759:90132..90580(-) | ||
Located in intron of: | ENSETEG00000019708 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | APIP | ||
Ensembl ID: | ENSETEG00000016758 | ||
Aliases: | None | ||
Description: | APAF1 interacting protein [Source:HGNC Symbol;Acc:17581] |
Percent Identity: | 76.82 % |
Parental protein coverage: | 70.75 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | GISLKHGNEIYIAP-SGVQKERIQPEDLFVCDINEQDIRGPPPHKQLSKSQCTPLFMNAYTMRGAGAVIH |
GISLKHGNEIYI.P..GVQKE.IQPEDLFVCD.NE.D..GPPP...L.K......F.NAYTMRGA..VIH | |
Retrocopy | GISLKHGNEIYITP>AGVQKE*IQPEDLFVCDKNE*DLSGPPPSNMLRKASVSS-FINAYTMRGASVVIH |
Parental | THSKAAVLATLLFPGQEFKITHQEMIKGIRKGTSGGYYRYDDMLVVPIIENTPEEKDLKERMARAMDEYP |
THS.AAV.ATLLFPGQEFKITHQEM.KGIRK.TSGGYYR....LVVPIIENTPEEKDL...MARAMDEYP | |
Retrocopy | THSQAAVMATLLFPGQEFKITHQEMMKGIRKCTSGGYYRNSALLVVPIIENTPEEKDL*KQMARAMDEYP |
Parental | DSCAVLVRRHG |
DSCA.L.R.HG | |
Retrocopy | DSCAMLLRGHG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000016758 | 1 retrocopy |
retro_etel_220 ,
|
Homo sapiens | ENSG00000149089 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022940 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000007394 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000003361 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003499 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011523 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004390 | 1 retrocopy |