RetrogeneDB ID: retro_etel_250

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: GeneScaffold_4270:138510..138783(+)
• Located in intron of: ENSETEG00000005439

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACN9
• Ensembl ID: ENSETEG00000010811
• Aliases: None
• Description: ACN9 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:21752]

Sequence

>retro_etel_250
ATGCCGGGCCAGCATGTCTTGCATGTGCTGGCCCTGTATCAGTGCATCTTGCAATTGCACCAGGTACCGCCCCCTGACCT
CAAAGTTCTGGGGGACCAGTACGTGAAGGATGAATTTAGCAGACATAAGACCATTGGTTTTGAAGAGGTCTAGTGCTTCC
TGCCGGCGTGGGAGGCATATGCAGCAGTACTGTGGCAACAAGCTAATGAAAGCAGACAGAATCCAACTGAAAAAAAAAAA
CCCGTTTTGGAACTGCCCTCCCCGAAGAAAAAC

Alignment

ORF - retro_etel_250 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.59 %
• Parental protein coverage: 73.23 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPGPHVSRVLALYRRILQLHQVLPPDLKALGDQYVKDEFRRHKSVGSDEAQRFLQEWEAXAYAAMLWQQA
          MPG.HV..VLALY..ILQLHQV.PPDLK.LGDQYVKDEF.RHK..G..E...FL..WE..AYAA.LWQQA
Retrocopy MPGQHVLHVLALYQCILQLHQVPPPDLKVLGDQYVKDEFSRHKTIGFEEV*CFLPAWE--AYAAVLWQQA

Parental  NESRQNSTEKASFGTALPKEKLN
          NESRQN.T........LP..K.N
Retrocopy NESRQNPTXXXXPVLELPSPKKN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_250 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000010811	1 retrocopy	retro_etel_250 ,
Tupaia belangeri	ENSTBEG00000006332	4 retrocopies	retro_tbel_171, retro_tbel_2148, retro_tbel_3833, retro_tbel_4126,