RetrogeneDB ID: retro_tbel_3833

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_19122:232..563(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACN9
• Ensembl ID: ENSTBEG00000006332
• Aliases: None
• Description: ACN9 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:21752]

Sequence

>retro_tbel_3833
ATCTTGAAGCTGCACCAAGTACTGCCCCCAGACCTCAAAGCCCTGGGTGACTAGTACGTGAAAAATGAATTTAGGAGACA
TAAGACCTTTTGGTTCTGACACGGCCCAGCATTTCTTGCAGGAATGGGAGGCGTATGCAGCAGTATTATGGCAATAAGTT
AATGAAAACAGACAAAATTCAACTTAAAAAGCACATTTTGGCACCTCCCTCCCAGAAGAAAAACTGAATGACTTCCATGA
TGAACCAACTGGACAGTTACAAGAGGTGATGCAAGGAGCCACTGAACCCAATAGGCAATTGAGTGTTGCTAAATCTACAA
AATCAAACTTT

Alignment

ORF - retro_tbel_3833 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.45 %
• Parental protein coverage: 88.19 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ILQLHRVLPPDLKALGDQYVKDEFRRHKTV-GSDEAQRFLQEWEAXVYAAVLWQQANEKRQNSTEKALFG
          IL.LH.VLPPDLKALGD.YVK.EFRRHKT..GSD.AQ.FLQEWEA..YAAVLWQ..NE.RQNST.KA.FG
Retrocopy ILKLHQVLPPDLKALGD*YVKNEFRRHKTF>GSDTAQHFLQEWEA--YAAVLWQ*VNENRQNST*KAHFG

Parental  TFLSEEKLNDFRDEQIGQLQELMQEATKLNKQFSITESTKSKF
          T.L.EEKLNDF.DE..GQLQE.MQ.AT..N.Q.S...STKS.F
Retrocopy TSLPEEKLNDFHDEPTGQLQEVMQGATEPNRQLSVAKSTKSNF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_3833 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_3833 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000010811	1 retrocopy	retro_etel_250,
Tupaia belangeri	ENSTBEG00000006332	4 retrocopies	retro_tbel_171, retro_tbel_2148, retro_tbel_3833 , retro_tbel_4126,