RetrogeneDB ID: retro_etel_473

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: GeneScaffold_781:265563..265943(+)
• Located in intron of: ENSETEG00000002594

Retrocopy information

• Ensembl ID: ENSETEG00000002610
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000001783
• Aliases: None
• Description: None

Sequence

>retro_etel_473
AAGTGGACAGAAAAGGAAATAGAGATGCTGAAGGCTGCCAGGAAGTGATTTGGGGATGATCTCAATCACCTCAACTGTGC
CATTAAAGTAACTCACATAAAGGCCACCGTGGAACTCACGGTATATGAAGACTGGCATTCCCCGTTCCAGCCAAGTCCCT
CAAGAAAGGGCCCAAGAAGGTGGCATCTGGTGTTTTGGTGCCTCCTACAGCAGCCCCTCCACCCAGCAGCTCCATTGTCC
CTGAGAGCCGGGGTCCCGAATTAAAGAAGCAGAAGGCCCTTAGTGCCCTGAATGACTCTGACACCAACCGTGACCTAGTG
GATATTGAGGGGCTAGTAGAAACTCCTCCAGCCAAGAAACATAGCTTCCACGAAGACAGT

Alignment

ORF - retro_etel_473 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.67 %
• Parental protein coverage: 99.25 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KWTDTEIEILKTAVKHFEDDLNHIRCIIKERTVAQIKATVKRKVYED-SGIPLPAESPKKGPKKVASGVL
          KWT..EIE.LK.A.K.F.DDLNH..C.IK...V..IKATV...VYED....P.PA.S.KKGPKKVASGVL
Retrocopy KWTEKEIEMLKAARK*FGDDLNHLNCAIK---VTHIKATVELTVYED<LAFPVPAKSLKKGPKKVASGVL

Parental  SPPPAAPPTSSSIVPEAGGPPIKKQKADVTLSALNDSEANSDLVDIEGLGETPLVKKLNFEQIS
          .PP.AAPP.SSSIVPE..GP..KKQKA...LSALNDS..N.DLVDIEGL.ETP..KK..F...S
Retrocopy VPPTAAPPPSSSIVPESRGPELKKQKA---LSALNDSDTNRDLVDIEGLVETPPAKKHSFHEDS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_473 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000001783	1 retrocopy	retro_etel_473 ,
Otolemur garnettii	ENSOGAG00000001835	1 retrocopy	retro_ogar_2725,