RetrogeneDB ID: retro_ogar_2725

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873655.1:484896..485159(+)
• Located in intron of: ENSOGAG00000004546

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000001835
• Aliases: None
• Description: None

Sequence

>retro_ogar_2725
CCTGTGATGGCAACCTACGACATCATCCTGAGCACCTGGGAAGTGATCATATTGATAATGTTTGGAATATTTTTCAATGT
CCATTCCACTGTGTAATTCAGGACATTCCCTTCACAGAGAAAGATTTTGAGAATGGCCCTTAGGACATGTATAACCTTTA
TGAGTAAGTTACCCACAACTGTTTCATCATCAAGGGCCTTTAGCTCTTCCTCTGAGGCTTCTCTTTCTGCCAAGTTTGGC
TCAATAAGCTCAAGGAATATATA

Alignment

ORF - retro_ogar_2725 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.42 %
• Parental protein coverage: 89.8 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PKLAACGIVLSAWGVIMLIMLGIFFNVHSAV-LIEDVPFTEKDFENGPQKIYNLYEQVSYNCFIAAGLYL
          P..A...I.LS.W.VI.LIM.GIFFNVHS.V..I.D.PFTEKDFENGP...YNLYE.V..NCFI..GL.L
Retrocopy PVMATYDIILSTWEVIILIMFGIFFNVHSTV<VIQDIPFTEKDFENGP*DMYNLYE*VTHNCFIIKGL*L

Parental  LLGGFSFCQVRLNKRKEYM
          .L.GFSFCQV.LNK.KEY.
Retrocopy FL*GFSFCQVWLNKLKEYI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2725 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000001783	1 retrocopy	retro_etel_473,
Otolemur garnettii	ENSOGAG00000001835	1 retrocopy	retro_ogar_2725 ,