>retro_etel_614
GATACGGTGACCCTCCTAGCCGAGGGCCTTCGGGAGAGCCGAAAGCCTAGCAAGGACGAGAAACTCGTCCGCTGTTTCTT
GGACAAGACCTTGACGTCATGGCTTGGTATCACATGTTGGCTACGCATCACTTGGCACTGCACGAGGACAAGCCCGACTT
GGTTGGCATCATCTGCACTCGCCTTTCACCAAAGAAGATTATTGAAAAGTGGGCAGACGTTGCCAGACGCCTGTGTGAAC
ACAAATATGGCAATGCCCCCCATGTCTGCATCAACGGGCACGTGGCTGCCCGTTTCCCCTTCATCCCCATGCCACTGGAC
TACGTCCTGCCCGAGCTGCTCAGGAATGCCATGAGGGCTACAATGGAGAGTCACCTAGACACCCCCTACAATGTCCCCGA
TGTGGCCATCACCATTGCCAACAGCGCTATCGATCTTGTCATCAGGATCTCAGACGGGGCGGGGGCATCGCTCACAAGGA
CCTGGAGCGGGTCATGGACAACCACTTCACCACGGCCGAAGCCAGCACCCAGGACCCCCGGATCAGCCCCCTTTTTGGCC
ACCTGGACATGCTCAGTGGTGGCCAGTCAGGACCTATGCACGGCTTTGGCTTCGGGCTGCCCATGTCTCGGGCGGAGTAC
CTTGGCAGTTCCCTGAGCCTGCAGTCCCTGCAGGGCACCAGCACAGGACTCTACCGGCGACTGCACCCCATTGATGGCCG
TGAGGGG
ORF - retro_etel_614 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
91.02 % |
Parental protein coverage: |
59.17 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | DVVTLLAEGLRESRKHIEDEKLVRFFLDKTLTSRLGI-RMLATHHLALHEDKPDFVGIICTRLSPKKIIE |
| D.VTLLAEGLRESRK...DEKLVR.FLDKTLTS.LGI..MLATHHLALHEDKPD.VGIICTRLSPKKIIE |
Retrocopy | DTVTLLAEGLRESRKPSKDEKLVRCFLDKTLTSWLGI<HMLATHHLALHEDKPDLVGIICTRLSPKKIIE |
|
Parental | KWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITI |
| KW.D.ARRLCEHKYGNAP.V.INGHVAARFPFIPMPLDY.LPELL.NAMRATMESHLDTPYNVPDV.ITI |
Retrocopy | KWADVARRLCEHKYGNAPHVCINGHVAARFPFIPMPLDYVLPELLRNAMRATMESHLDTPYNVPDVAITI |
|
Parental | ANNDIDLVIRISD-RGGGIAHKDLERVMDYHFTTAEASTQDPRISPLFGHLDMLSGGQSGPMHGFGFGLP |
| AN..IDLVIRISD.RGGGIAHKDLERVMD.HFTTAEASTQDPRISPLFGHLDMLSGGQSGPMHGFGFGLP |
Retrocopy | ANSAIDLVIRISD<RGGGIAHKDLERVMDNHFTTAEASTQDPRISPLFGHLDMLSGGQSGPMHGFGFGLP |
|
Parental | MSRAEYLGSSLSLQSLQGTSTD-YRRLHPIDGREG |
| MSRAEYLGSSLSLQSLQGTST..YRRLHPIDGREG |
Retrocopy | MSRAEYLGSSLSLQSLQGTSTGLYRRLHPIDGREG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_614 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.