>retro_rnor_2322
ATGATACTGACTTCAGTGCTGGGCAGCGGCCCTCGGAGCGGGTCTTAACTTTGGCCCCCTCTTAGGGTCCTCACTGTCAT
TCCGGGTTCGCTCAACATCAGCCACCGATACACACCATGTAGAGCTGGCCAGGGAACGCTCCAAGACTGTTACCTCCTTT
TACAACCAGTCAGCTATTGATGTGGTAGCAGAGAAGCCCTCAGTCTGCCTCACTCCCACCATGATGCTCTATTCTGGTCA
CTCACAGGATGGCAGCCACCTTCTGAAAAGTGGCTGCTACTTGCAGCAAGAGTTATCGGTGAGGATCGCTCACCGCATCA
AGGCCTTCCGTAGTCTTCCTTTCATCATTGGTTGCAACCCTACCATATTGCGTGTGCACGAGCTTTACGTCCGGGTCTTC
CAGAAGCTGACAGACTTCCCTCCGATCAAGGACCAGGCAGACTAGGCCCAGTATTGCCAGCTGGTGCGACAGCTGCTAGA
TGACCACAAGGATGTGGTGACCCTGTTAGCTGAGGGTCTTCGTGAGAGCCGGAAACACATAGAGGATGAAAAGCTAGTCT
GGTACTTGCTGGATAAAACACTAAAGTCCAGACTTGGGATCCGAATGCTGGCTACTCACCACTTGGCGCTACATGAAGAC
AAGCCTGATTTTGTTGGCATCATCTGCACTCGTCTGTCACCCAAGAAGATTATTGAGAAGTGGGTGGATTTTGCCAGATG
CCTGTGTGAGCACAAGTATGGCAATGCCCCTCGAGTCCGCATCAATGGGCATGTGGCTGCCGGTTTCCCCTTCATTCCTA
TGCGGCTGGACTATATCCTGCCTGAGCTCCTCAAGAACGCCGTGAGAGCCACAATGGGGAGTCACCTAGACACGCCCTAC
AATGTTCCTGATGTGGTCATCACCATCGCCAGTAATGTTGTGGATCTCATCATCAGGATCTCAGACCAGGGTGGAGGAAT
CGCTCATAATGACCTGGATCGAGTCATGGACCACCACTTCACCACATCTGAGGCCAGCACCCAGGACCCCCAAATCGGCC
CCCTCTTCGGCCACCTGGATATGCACAGTGGACCTATGCATGGCTTTGGCTTCCGGTTGCCTATGCGGAGTATCTCGTTG
GCTCCCTGCACCTGCAGTCCCTGCAGGGCATTGGCACAGATGTCTACCTACGGCTCTGCCACATTGATGGCCGGGAGGAA
AGCTTCAGAATC
ORF - retro_rnor_2322 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90.1 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MILTSVLGSGPRSGSSLWP-LLGSSLSLRVRSTSATDTHHVELARERSKTVTSFYNQSAIDVVAEKPSVR |
| MILTSVLGSGPRSGS.LWP.LLGSSLS.RVRSTSATDTHHVELARERSKTVTSFYNQSAIDVVAEKPSV. |
Retrocopy | MILTSVLGSGPRSGS*LWP>LLGSSLSFRVRSTSATDTHHVELARERSKTVTSFYNQSAIDVVAEKPSVC |
|
Parental | LTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDF |
| LTPTMMLYSG.SQDGSHLLKSG.YLQQEL.VRIAHRIK.FRSLPFIIGCNPTIL.VHELY.R.FQKLTDF |
Retrocopy | LTPTMMLYSGHSQDGSHLLKSGCYLQQELSVRIAHRIKAFRSLPFIIGCNPTILRVHELYVRVFQKLTDF |
|
Parental | PPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLA |
| PPIKDQAD.AQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLV.Y.LDKTL.SRLGIRMLATHHLA |
Retrocopy | PPIKDQAD*AQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVWYLLDKTLKSRLGIRMLATHHLA |
|
Parental | LHEDKPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKN |
| LHEDKPDFVGIICTRLSPKKIIEKWVDFAR.LCEHKYGNAPRVRINGHVAA.FPFIPM.LDYILPELLKN |
Retrocopy | LHEDKPDFVGIICTRLSPKKIIEKWVDFARCLCEHKYGNAPRVRINGHVAAGFPFIPMRLDYILPELLKN |
|
Parental | AMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLF |
| A.RATM.SHLDTPYNVPDVVITIA.N.VDLIIRISD.GGGIAH.DLDRVMD.HFTT.EASTQDP.I.PLF |
Retrocopy | AVRATMGSHLDTPYNVPDVVITIASNVVDLIIRISDQGGGIAHNDLDRVMDHHFTTSEASTQDPQIGPLF |
|
Parental | GHLDMHSGGQSGPMHGFGFG-LPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREESFRI |
| GHLDMH....SGPMH..GFG.LP...AYAEYL.GSL.LQSLQGIGTDVYLRL.HIDGREESFRI |
Retrocopy | GHLDMH----SGPMH--GFG<LPV--AYAEYLVGSLHLQSLQGIGTDVYLRLCHIDGREESFRI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .22 RPM |
33 .07 RPM |
SRP017611_kidney |
0 .07 RPM |
112 .56 RPM |
SRP017611_liver |
0 .00 RPM |
22 .46 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_2322 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_2322 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_2322 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.