>retro_etel_696
ATGGCCACCAACTCGTGGCCTCTGGCGGTTGATGAGCAGGAAGCAGCTGTCAAATGGATGAACAGCTTGCAGATTAAGGA
AGAGAAGAACAAAGCAGATACCAACGGAGTTATCAAAACTGATGCTCCTCCAGAGAAAACAAATGAAGAAGAAAAAGAGG
ACAAAGCCACCCAGTCCTTACTCAATAAGCTGATCAGAAGCAACTTGATCGATAACACAAACCAGGTGGAAGTCTTGCAG
CGGTACCCAAACTCTCCCCTCTACTCTGTAAAGTCTTTTGAATAGCTCAAGCTGAAACCACAGCTTCTCCAGGGAGTCTA
CGCCATGGGCTTCAACCAACCCTCCAAGATACAAGAGAGCGCATTACCCATGATACCTGCTGATTCCCTACAGAATCTGA
TTGCTCAGTCTCAGTCTGGTACTGGCAAGACGGCTGCCTTTGTCTTGGCCATGCTCAGCCGAGTGGAACCAACAGACACA
TGCCCCCAGTGTTTGTACCTCTCCCCAACTTATGAGCTGGCTCTTCAAACCGAAAAAAGTGATTGAGCAGATGGTCAAAT
TTTATCCAGAGCTAAAGCTTGCCTATGCTGTTCAAGGCAATAAATTGGAAAGAGGTCAAAAGATCAGTGAACAGATTGTC
ATCCGCACCCTTGGAATCGTGCTGGACCGGTGTGCCAAGTTCAATTTCATTGACCCCAAGAAGATCAAGATGTTTGTTCT
GGATGAGGCTGATGTAATGATAGCCACTCAGGGCCACCAGGATCAGAGAATCCGCATCCAGAGGATGCTGCCCAGGAATT
GCCAGATGCTGCTTTTCTCGGCCACTTTTGAAGACTCCGTGTGGAAGTTTTCCCAGAAAGTGGTCCCCGACCCCAACATC
ATCAAACTGAAGCATGAGGAGGAGACCTTGGACACCATCAAGCAGTATTACATCCTAGGCAATAACAGAGACGAGAAGTT
CCAAGCCTTCTATAACCTCTACGGAGCTATCACCATTGCCCAAGCCACGATCTTCCGCCACACCCACAAGACAGCAGCAG
AGCTCTTGAAGGAAGGCCACCAGGTGGCTCTTCTGACTGGTGAGATGGTGGTGGAGCAGAGAGCTGTGGTGATGGAGCGC
TTCTGAGAGGGCAAGGAGAAGGTTCTGGTGACCACCAACGTGTGCGCCCGGGGCATCGATGTGGAGCAAGTGTCTGTCGT
CATCAACTTTGCCCTTCCAGGGGACAAGGATGTGAACCCGGACAATGAGAGGTACCTGCACCGCATCAGGCGCACTGGCT
GCTTTGGCAAGAGAGGCCTGGCCATGAACATGGTGGACAGCAAGCACAGCATGAACATCCTCAACAGGATCCAGGAGCAT
TTCAATAAGAAGATATAAAGATTGGACACGGATGACTTAGACTAGATTGAGAAAATCGCC
ORF - retro_etel_696 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
87.66 % |
Parental protein coverage: |
99.79 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MATDSWALAVDEQEAAVKSMNSLQIKEETSKADTNGVIKTSAPPEKINEEEKEDKAAQSLLNKLIRSNLV |
| MAT.SW.LAVDEQEAAVK.MNSLQIKEE..KADTNGVIKT.APPEK.NEEEKEDKA.QSLLNKLIRSNL. |
Retrocopy | MATNSWPLAVDEQEAAVKWMNSLQIKEEKNKADTNGVIKTDAPPEKTNEEEKEDKATQSLLNKLIRSNLI |
|
Parental | DNTNQVEVLQRDPNSPLYSVRSFEELRLKPQLLQGVYAMGFNRPSKIQESALPMMLAEPPQNLIAQSQSG |
| DNTNQVEVLQR.PNSPLYSV.SFE.L.LKPQLLQGVYAMGFN.PSKIQESALPM..A...QNLIAQSQSG |
Retrocopy | DNTNQVEVLQRYPNSPLYSVKSFE*LKLKPQLLQGVYAMGFNQPSKIQESALPMIPADSLQNLIAQSQSG |
|
Parental | TGKTAAFVLAMLSRVEPTDTCPQCLCLSPTYELALQT-GKVIEQMGKFYPELKLAYAVRGNKLERGQKIS |
| TGKTAAFVLAMLSRVEPTDTCPQCL.LSPTYELALQT..KVIEQM.KFYPELKLAYAV.GNKLERGQKIS |
Retrocopy | TGKTAAFVLAMLSRVEPTDTCPQCLYLSPTYELALQT>KKVIEQMVKFYPELKLAYAVQGNKLERGQKIS |
|
Parental | EQIVIGTPGTVLDWCAKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDS |
| EQIVI.T.G.VLD.CAK..FIDPKKIK.FVLDEADVMIATQGHQDQ.IRIQRMLPRNCQMLLFSATFEDS |
Retrocopy | EQIVIRTLGIVLDRCAKFNFIDPKKIKMFVLDEADVMIATQGHQDQRIRIQRMLPRNCQMLLFSATFEDS |
|
Parental | VWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLA |
| VWKF.QKVVPDPNIIKLK.EEETLDTIKQYY.L.NNRDEKFQA..NLYGAITIAQA.IF.HT.KTA.... |
Retrocopy | VWKFSQKVVPDPNIIKLKHEEETLDTIKQYYILGNNRDEKFQAFYNLYGAITIAQATIFRHTHKTA---- |
|
Parental | AELSKEGHQVALLSGEMVVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN |
| AEL.KEGHQVALL.GEMVVEQRA.V.ERF.EGKEKVLVTTNVCARGIDVEQVSVVINF.LP.DKD.NPDN |
Retrocopy | AELLKEGHQVALLTGEMVVEQRAVVMERF*EGKEKVLVTTNVCARGIDVEQVSVVINFALPGDKDVNPDN |
|
Parental | ETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIA |
| E.YLHRI.RTG.FGKRGLA.NMVDSKHSMNILNRIQEHFNKKI.RLDTDDLD.IEKIA |
Retrocopy | ERYLHRIRRTGCFGKRGLAMNMVDSKHSMNILNRIQEHFNKKI*RLDTDDLD*IEKIA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_696 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.