>retro_itri_1336
ATGGACACAAAAAGAATCAAGATATTTGTTCTGGATGAGGCTGACATGATGATAGCCACTCAGGGCCACCAAGATCAGAG
CATCCATATCCAGAGGATGCCACCCAAGAACTGCCAGATGTTGCTTTTCTCTGCCACGTTTGAAGTCGCTGTGTTGAAAT
TTGCTCAGAAAGTAGTTCTGAGCAACATTATCAAAGTAAAGTGTGAGTAGGAGATTTTGGACATCATCAAGCAATACTAT
GACCTGTGCAGTAACAGAGATGAGAAGTTCTAGACCTTGTGCAACCTGTATGGGGCCATCACCATCGCTCAAGCCATGAT
CTTCTGCCATATCTGCAAAATAGCTAGTTGACTGACAGCAGAGTTCTCAAAAGAAGGCCCCCAAGAGGCCCTGGTGAGTG
GAGAAATAATGGTGGAGCAGAGAACTGCTGTTATTGAGTGCTTCTGAGAGGGTAAAGAGAAGGTTCTGGTGACCCCCAAG
GTGTGAGCTTGTGGTATCAATGTTGACCAAGTGTCTGTTGTTATCAACTTCAATTTTCCTGTGGACAAGGATGGGAACCC
AGACAACATGATCTACTTGTACTGGATCGGGTGTACTGGTCACTTTGGCAAGAGGGGACTGACTGTGAACATTATCAAGC
ACAGCATGAACATCCTGAATAGAATCCAGGAGCATTTTAATAAGAGATAGAAAAATTAGACATGGATGATTCAGATGAGA
TTGAGAAAATAGCCAGT
ORF - retro_itri_1336 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
76. % |
Parental protein coverage: |
51.98 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | IDPKRIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKRE |
| .D.KRIK.FVLDEAD.MIATQGHQDQSI.IQRM.P.NCQMLLFSATFE..V.KFAQKVV...NIIK.K.E |
Retrocopy | MDTKRIKIFVLDEADMMIATQGHQDQSIHIQRMPPKNCQMLLFSATFEVAVLKFAQKVVLS-NIIKVKCE |
|
Parental | EETLDTIKQYYVLCNNRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVE |
| .E.LD.IKQYY.LC.NRDEKF..LCNLYGAITIAQAMIFCH..K.AS.L.AE.SKEG.Q.AL.SGE.MVE |
Retrocopy | *EILDIIKQYYDLCSNRDEKF*TLCNLYGAITIAQAMIFCHICKIAS*LTAEFSKEGPQEALVSGEIMVE |
|
Parental | QRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV |
| QR.AVIE.F.EGKEKVLVT..V.A.GI.V.QVSVVINF..PVDKDGNPDN..YL..IG.TG.FGKRGL.V |
Retrocopy | QRTAVIECF*EGKEKVLVTPKV*ACGINVDQVSVVINFNFPVDKDGNPDNMIYLYWIGCTGHFGKRGLTV |
|
Parental | NMVDSKHSMNILNRIQEHFNKK-IERLDTDDLDEIEKIAN |
| N....KHSMNILNRIQEHFNK..IE.LD.DD.DEIEKIA. |
Retrocopy | NII--KHSMNILNRIQEHFNKR<IEKLDMDDSDEIEKIAS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_1336 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_1336 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.