RetrogeneDB ID: | retro_etel_782 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_163596:2678..3023(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSETEG00000011478 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | TMEM218 | ||
| Ensembl ID: | ENSETEG00000012586 | ||
| Aliases: | None | ||
| Description: | transmembrane protein 218 [Source:HGNC Symbol;Acc:27344] |
Retrocopy-Parental alignment summary:
>retro_etel_782
ATCGCTGGCATGGTGCCCTGAGTGGGTGCAGGTGTGTTCTTCTTCACCCTGCTCTGGGTGTCCGGGCTGCTGCTGCGTGT
GCTGGCATCCAGAGCCTCCGGTGTACCTAGGTGCTCCATTATTTTTAGATTCCTGGATGATCTGATCATCACATCAGTTC
TGTTGTTTTTCCCTCCAGACAGTGAATTCCCAACGCCAGATGTGGAAATTAAGATTGGGGATGTCTTTTTCATTGGCCGC
TATGTCCTTCCGGCTTTAATCAGTGCTGTATTTCTTAGAGGACTCTTCTTGGTCCTAATCCATCATATTTTGGAGCCCAT
TTATGCCAAACCACCCCGGTTCTTT
ORF - retro_etel_782 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 71.3 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MAGTVLGVGAGVFILALLWVLVLLLCVLLSRASGIARFSIIFVFLGAVVITSVLLLFPRATEFPIPDVEV |
| .AG.V..VGAGVF...LLWV..LLL.VL.SRASG..R.SIIF.FL....ITSVLL.FP...EFP.PDVE. | |
| Retrocopy | IAGMVP*VGAGVFFFTLLWVSGLLLRVLASRASGVPRCSIIFRFLDDLIITSVLLFFPPDSEFPTPDVEI |
| Parental | KIVDAFFIGRYVLLALLSAIFLGGLFLVLIHHILEPIYAKPLRSF |
| KI.D.FFIGRYVL.AL.SA.FL.GLFLVLIHHILEPIYAKP.R.F | |
| Retrocopy | KIGDVFFIGRYVLPALISAVFLRGLFLVLIHHILEPIYAKPPRFF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_782 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000012586 | 1 retrocopy |
retro_etel_782 ,
|
| Felis catus | ENSFCAG00000015332 | 1 retrocopy |