RetrogeneDB ID: retro_etel_782

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_163596:2678..3023(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000011478
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: TMEM218
• Ensembl ID: ENSETEG00000012586
• Aliases: None
• Description: transmembrane protein 218 [Source:HGNC Symbol;Acc:27344]

Sequence

>retro_etel_782
ATCGCTGGCATGGTGCCCTGAGTGGGTGCAGGTGTGTTCTTCTTCACCCTGCTCTGGGTGTCCGGGCTGCTGCTGCGTGT
GCTGGCATCCAGAGCCTCCGGTGTACCTAGGTGCTCCATTATTTTTAGATTCCTGGATGATCTGATCATCACATCAGTTC
TGTTGTTTTTCCCTCCAGACAGTGAATTCCCAACGCCAGATGTGGAAATTAAGATTGGGGATGTCTTTTTCATTGGCCGC
TATGTCCTTCCGGCTTTAATCAGTGCTGTATTTCTTAGAGGACTCTTCTTGGTCCTAATCCATCATATTTTGGAGCCCAT
TTATGCCAAACCACCCCGGTTCTTT

Alignment

ORF - retro_etel_782 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.3 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAGTVLGVGAGVFILALLWVLVLLLCVLLSRASGIARFSIIFVFLGAVVITSVLLLFPRATEFPIPDVEV
          .AG.V..VGAGVF...LLWV..LLL.VL.SRASG..R.SIIF.FL....ITSVLL.FP...EFP.PDVE.
Retrocopy IAGMVP*VGAGVFFFTLLWVSGLLLRVLASRASGVPRCSIIFRFLDDLIITSVLLFFPPDSEFPTPDVEI

Parental  KIVDAFFIGRYVLLALLSAIFLGGLFLVLIHHILEPIYAKPLRSF
          KI.D.FFIGRYVL.AL.SA.FL.GLFLVLIHHILEPIYAKP.R.F
Retrocopy KIGDVFFIGRYVLPALISAVFLRGLFLVLIHHILEPIYAKPPRFF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_782 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000012586	1 retrocopy	retro_etel_782 ,
Felis catus	ENSFCAG00000015332	1 retrocopy	retro_fcat_1939,