RetrogeneDB ID: retro_fcat_103

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: JH408902.1:201547..202258(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSFCAG00000009438
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSFCAG00000023551
• Aliases: None
• Description: None

Sequence

>retro_fcat_103
ATGGCGAAAGCAGCAGAGTCTTCGGGAGAGCCAGGGACAACGTGGCCCAGGCCCCTGTTTGCAGGCCTTTCTGATATATC
CATCTCACAAGACATCCTCGTGGAAGGAGAATTCACCATTCCTATGAGATCTCACATTCGGGAATTTGACAGCTCCACGT
TAAATGAATCTGTTCAGAATACTATTACGCGTGATCTAAAAGCTGTTGGGAAAAAATTCATGCATGTTTTGTACCCAAGA
AAAAGTAATATTCTTTTGAGAGATTGGGATTTATGGGGCCCTTTGATCCTTTGTGTGACACTTGCATTAATGCTTCAAAG
AAGCTCTGTAGATAGTGAAAAGGATGGAGGGCCCCAGTTTGCAGAAGTCTTTGTCATTGTCTGGTTTCGTGCAGTTACCA
CCACCCTCAACTCAAAACTTCTTGAAGGAAACTTATCTTTTTTCCAGAGCCTCTGTGTGCTGGGTTACCGTATACTTCCC
TTAACAGTGTCAATGCTGGTTTGCCAGTTAGTCCTTTTGGCTGAGCAGGGACCAATAAACTTCATGGTCCGGCTTTTTGT
GGTGATTGTGATGTTTGCCTGGTCTATAGCAGCCTCTACAGCTTTTCTTGCCGATAGCCAGCCTCCAAACCGCAAAGCCC
TCACCATTTATCCTGTTTTCTTGTTCTATTTTGTCATCAATTGGATGATTCTCACCTTCACTCCCAAGTAA

Alignment

ORF - retro_fcat_103 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.19 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAKAAESSGEPGTTSPRPLFAGLSDISISQDIPVEGEITIPMRSHIREFDSSTLNESVQNTIMRDLKAVG
          MAKAAESSGEPGTT.PRPLFAGLSDISISQDI.VEGE.TIPMRSHIREFDSSTLNESVQNTI.RDLKAVG
Retrocopy MAKAAESSGEPGTTWPRPLFAGLSDISISQDILVEGEFTIPMRSHIREFDSSTLNESVQNTITRDLKAVG

Parental  KKFMHVLYPRKSNTLLRDWDLWGPLILCVTLALMLQRSSVDSEKDGGPQFAEVFVIVWFGAVTITLNSKL
          KKFMHVLYPRKSN.LLRDWDLWGPLILCVTLALMLQRSSVDSEKDGGPQFAEVFVIVWF.AVT.TLNSKL
Retrocopy KKFMHVLYPRKSNILLRDWDLWGPLILCVTLALMLQRSSVDSEKDGGPQFAEVFVIVWFRAVTTTLNSKL

Parental  LGGNISFFQSLCVLGYCILPLTVAMLVCRLVLLAEQGPINFMVRLFVVIVMFTWSIVASTAFLADSQPPN
          L.GN.SFFQSLCVLGY.ILPLTV.MLVC.LVLLAEQGPINFMVRLFVVIVMF.WSI.ASTAFLADSQPPN
Retrocopy LEGNLSFFQSLCVLGYRILPLTVSMLVCQLVLLAEQGPINFMVRLFVVIVMFAWSIAASTAFLADSQPPN

Parental  RKALAIYPVFLFYFVISWMILTFTP
          RKAL.IYPVFLFYFVI.WMILTFTP
Retrocopy RKALTIYPVFLFYFVINWMILTFTP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	7.35 RPM
SRP017611_kidney	0.00 RPM	6.39 RPM
SRP017611_liver	0.00 RPM	7.68 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_103 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_103 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000023551	1 retrocopy	retro_fcat_103 ,
Otolemur garnettii	ENSOGAG00000002223	1 retrocopy	retro_ogar_2677,
Pteropus vampyrus	ENSPVAG00000014526	1 retrocopy	retro_pvam_215,