RetrogeneDB ID: | retro_fcat_1095 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:70176426..70176735(+) | ||
Located in intron of: | ENSFCAG00000008796 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SAT1 | ||
Ensembl ID: | ENSFCAG00000004032 | ||
Aliases: | None | ||
Description: | spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:10540] |
Percent Identity: | 92.23 % |
Parental protein coverage: | 55.14 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SVVGFAMYYFTYDPWIGKLLYLEDFFVMSDYRGFGIGSEILKNLSQVAMKCRCSSMHFLVAEWNEPSINF |
.VVGFAMYYFTYDPWIGKLLYLEDFF.MSDYRGFGIGSEILKNLSQVAMK.RCSSMHFLVA.WNEPSINF | |
Retrocopy | TVVGFAMYYFTYDPWIGKLLYLEDFFGMSDYRGFGIGSEILKNLSQVAMK*RCSSMHFLVAKWNEPSINF |
Parental | YKRRGASDLSSEEGWRLFKIDKEYL-LKMAAEE |
YK.RGASDLSSEEGW.LFKIDKEY..LKMAAEE | |
Retrocopy | YKKRGASDLSSEEGWKLFKIDKEYF*LKMAAEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .46 RPM | 49 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 289 .28 RPM |
SRP017611_liver | 0 .00 RPM | 178 .73 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000004032 | 3 retrocopies |
retro_fcat_1095 , retro_fcat_332, retro_fcat_444,
|
Homo sapiens | ENSG00000130066 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027873 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004919 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000112 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025283 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020190 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021741 | 2 retrocopies |