RetrogeneDB ID: retro_fcat_444

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: A3:102997776..102998271(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSFCAG00000023626
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SAT1
• Ensembl ID: ENSFCAG00000004032
• Aliases: None
• Description: spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:10540]

Sequence

>retro_fcat_444
CGGCCACTGCCGCCGACTGCAGTGACATCCTGCAGCCGGCTAATCAAGGAACTGGCCAAATACGAATATATGGAAGAGCA
AGTAATGTTAACTGAAAAAGATCTACTAGAGGATGGTTTCGGAGAGCACCCTTTCTACCACTGCCTGGTTGCAGAAGTGC
CCAAGGAGCACCGGTCTCCAGAAGGACACAGTGTTGTTGGTTTCACCATGTACTACTTTACCTATGACCCGTGGATTGGC
AAACTGTTGTATCTTGAGGACTTCTTCGTAATGAGTGACTATAGAGGCTTTGGCATAGGATCAGAAATTCTGAAGAACCT
AAGCCAGGTTGCCATGAAATGTCACTGCAGCAGCATGCACTTCTTGGTAGCCGAATGGAATGAACCATCTATCAACTTCT
ACAAAAGAAGAGGTGCTTCTGATCTGTCCAGCGAAGAGGGATGGAGACTCTTCAAGATCGACAAGGAGTATTTGCTAAAG
ATGGCAGCAGAGGAG

Alignment

ORF - retro_fcat_444 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.73 %
• Parental protein coverage: 89.19 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RPATAADCSDILRLIKELAKYEYMEEQVMLTEKDLLEDGFGEHPFYHCLVAEVPKEHRSPEGHSVVGFAM
          RP..........RLIKELAKYEYMEEQVMLTEKDLLEDGFGEHPFYHCLVAEVPKEHRSPEGHSVVGF.M
Retrocopy RPLPPTAVTSCSRLIKELAKYEYMEEQVMLTEKDLLEDGFGEHPFYHCLVAEVPKEHRSPEGHSVVGFTM

Parental  YYFTYDPWIGKLLYLEDFFVMSDYRGFGIGSEILKNLSQVAMKCRCSSMHFLVAEWNEPSINFYKRRGAS
          YYFTYDPWIGKLLYLEDFFVMSDYRGFGIGSEILKNLSQVAMKC.CSSMHFLVAEWNEPSINFYKRRGAS
Retrocopy YYFTYDPWIGKLLYLEDFFVMSDYRGFGIGSEILKNLSQVAMKCHCSSMHFLVAEWNEPSINFYKRRGAS

Parental  DLSSEEGWRLFKIDKEYLLKMAAEE
          DLSSEEGWRLFKIDKEYLLKMAAEE
Retrocopy DLSSEEGWRLFKIDKEYLLKMAAEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	49.81 RPM
SRP017611_kidney	0.72 RPM	289.28 RPM
SRP017611_liver	0.71 RPM	178.73 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_444 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_444 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000004032	3 retrocopies	retro_fcat_1095, retro_fcat_332, retro_fcat_444 ,
Homo sapiens	ENSG00000130066	1 retrocopy	retro_hsap_2979,
Gorilla gorilla	ENSGGOG00000027873	1 retrocopy	retro_ggor_2063,
Myotis lucifugus	ENSMLUG00000004919	1 retrocopy	retro_mluc_2472,
Mustela putorius furo	ENSMPUG00000000112	1 retrocopy	retro_mputfur_264,
Mus musculus	ENSMUSG00000025283	2 retrocopies	retro_mmus_1621, retro_mmus_2639,
Pongo abelii	ENSPPYG00000020190	1 retrocopy	retro_pabe_2470,
Pan troglodytes	ENSPTRG00000021741	2 retrocopies	retro_ptro_2013, retro_ptro_2934,