RetrogeneDB ID: | retro_fcat_1101 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:83056157..83056590(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MED21 | ||
Ensembl ID: | ENSFCAG00000030691 | ||
Aliases: | None | ||
Description: | mediator complex subunit 21 [Source:HGNC Symbol;Acc:11473] |
Percent Identity: | 72.41 % |
Parental protein coverage: | 99.31 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYAQLFAALIARTAKDID |
MADRLTQLQD.V..LADQFCNAIGVLQ.CGPPA.F...QTA.N.D.P.NPTEEY..LFAALI.RTAKD.D | |
Retrocopy | MADRLTQLQDVVSALADQFCNAIGVLQHCGPPAPFPDAQTAMNEDLPTNPTEEYV*LFAALIPRTAKDMD |
Parental | VLIDS-LPSEESTAA-LQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIAQSQLKTRSGTHS |
VL..S.L......A...QAASLYKLEEE.HEAAT.LEDV.YRGD.LLE.IQS.LA..A.SQL.TRS.TH. | |
Retrocopy | VLVHSLLSEKSTAAL>IQAASLYKLEEESHEAATYLEDVIYRGDGLLE*IQSTLAPVA*SQLETRSSTHP |
Parental | QSLPD |
QSLPD | |
Retrocopy | QSLPD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 24 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .69 RPM |
SRP017611_liver | 0 .00 RPM | 7 .18 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011670 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010041 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006223 | 1 retrocopy | |
Felis catus | ENSFCAG00000030691 | 1 retrocopy |
retro_fcat_1101 ,
|
Homo sapiens | ENSG00000152944 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016313 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007678 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005431 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004377 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008391 | 2 retrocopies |