RetrogeneDB ID: | retro_fcat_1218 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:142041030..142041400(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM168B | ||
Ensembl ID: | ENSFCAG00000000303 | ||
Aliases: | None | ||
Description: | family with sequence similarity 168, member B [Source:HGNC Symbol;Acc:27016] |
Percent Identity: | 59.38 % |
Parental protein coverage: | 64.62 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTY-YTQPLYAAPPHVIHHTTVVQPNGMPATVYPAPIPP |
V.PY.....P...AV.P..S..P...P..Q...Y..TQP..A.PPH.IHHTTVVQPN.M....YP.PIP. | |
Retrocopy | VTPYTVFCPPTNGAVPPYSSS-PTKMPTPQESPY>HTQPQ*AVPPHIIHHTTVVQPNCMLVVIYPDPIPL |
Parental | PRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAP-HPVTVPTYRAPGTPTYSYVPPQW |
.RGNGVTMGMVAGTT.AMSAGTLLT.H..TPVAP.H...V...R.P...TYS.VPPQW | |
Retrocopy | LRGNGVTMGMVAGTTVAMSAGTLLTFHTSTPVAPMHCAHVSGPRGP---TYS*VPPQW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 19 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 4 .23 RPM |
SRP017611_liver | 0 .00 RPM | 2 .73 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000004222 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000009590 | 1 retrocopy | |
Equus caballus | ENSECAG00000017018 | 1 retrocopy | |
Felis catus | ENSFCAG00000000303 | 1 retrocopy |
retro_fcat_1218 ,
|
Monodelphis domestica | ENSMODG00000018633 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011824 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000206 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000017162 | 1 retrocopy |