RetrogeneDB ID: | retro_itri_262 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393281.1:7677850..7678338(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM168B | ||
Ensembl ID: | ENSSTOG00000000206 | ||
Aliases: | None | ||
Description: | family with sequence similarity 168, member B [Source:HGNC Symbol;Acc:27016] |
Percent Identity: | 51.72 % |
Parental protein coverage: | 80.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 7 |
Parental | MYPGANPTFQTVLDIARGLLNLDCYTPGTPYKVSCSPTSGAVPPYSSSPNPYQTAVYPVRSAY-PQQSPY |
.YP...P........A..L.....Y.P......S.........P.S....PY.....PV.S...P...P. | |
Retrocopy | VYPNGFPMGYAAAAPAYSLPWRESYLPNRLH--SWHTLQSVLSPNSWAVPPYSSSSDPVGSPH<PPAEPL |
Parental | -AQQGTYYTQPL-YAAPPHVIHHTTVVQPNGMP-ATVYPAPIPPPRGNGVT-MGMVAGTTMAMSAGTLLT |
.AQQG.YYTQPL.YA.P.HVI.HT.VVQPNGM..A.VYP.PIPPPRGNGV..MGMV.G..M.MSAGTLLT | |
Retrocopy | <AQQGMYYTQPL<YATPTHVILHTLVVQPNGMQ<AIVYPDPIPPPRGNGVI<MGMVPGIMMTMSAGTLLT |
Parental | AHSPTPVAPHPVTV-PTYRAPGTP-TYSYVPPQW |
.H.PTPVAP.PVT..P..R....P.TYSY.P.QW | |
Retrocopy | VHFPTPVAPRPVTA<PHTRSQEYP<TYSYMPRQW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000004222 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000009590 | 1 retrocopy | |
Equus caballus | ENSECAG00000017018 | 1 retrocopy | |
Felis catus | ENSFCAG00000000303 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018633 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011824 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000206 | 2 retrocopies |
retro_itri_191, retro_itri_262 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000014507 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017162 | 1 retrocopy |