RetrogeneDB ID: | retro_fcat_1310 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:142557479..142557921(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJC9 | ||
Ensembl ID: | ENSFCAG00000004448 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily C, member 9 [Source:HGNC Symbol;Acc:19123] |
Percent Identity: | 51.68 % |
Parental protein coverage: | 56.32 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | EDIQAFEKTYKGSEEELADIKQAYLDFKGDMDQIMESVLCVQYTEEPRIRNIIQQAIDAGEIPSYNAFVK |
ED.Q.F.K...GSEEELADI.QA.L.F...M.Q..ESVL....TE.PRIRN..QQ....GE.P.Y.AF.K | |
Retrocopy | EDFQEFAKICQGSEEELADIEQARLNFERNMGQPTESVLHTRPTE*PRIRNVVQQTNHTGEGPAYDAFAK |
Parental | ESKQKMNARKRRAQEEAKEAEMSRKELGLDEGVDNLKAVIQSRQ-KDR-QKEMDNFLAQMEAKYCKPSKR |
ESKQKMNARKR......K.........GLDE..........S.Q.K.R.Q.EMD..L.QME.KY.KPSK. | |
Retrocopy | ESKQKMNARKR-SGKRLKTQK*PGRGWGLDEDTGGYPGSSCSKQAKGR>QQEMDTVLTQMESKYYKPSKS |
Parental | GGKKTPLKK |
..K....KK | |
Retrocopy | RSKELSRKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .67 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .27 RPM |
SRP017611_liver | 0 .00 RPM | 2 .43 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016933 | 1 retrocopy | |
Felis catus | ENSFCAG00000004448 | 1 retrocopy |
retro_fcat_1310 ,
|
Homo sapiens | ENSG00000213551 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015046 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000004539 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000003792 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016595 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003496 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000002343 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000034219 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000028067 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000011504 | 1 retrocopy |