RetrogeneDB ID: | retro_pabe_1799 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 20:5243816..5244471(-) | ||
Located in intron of: | ENSPPYG00000010707 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJC9 | ||
Ensembl ID: | ENSPPYG00000002343 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily C, member 9 [Source:HGNC Symbol;Acc:19123] |
Percent Identity: | 85.84 % |
Parental protein coverage: | 99.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VHPDRVGEGDKEDATRRFQILGKVYSVLSDREQRAVYDEQGTVDEDSPVLTQDRDWEAYWRLLFKKISLE |
VHPD.VGEGDKEDATR.FQILGKVYS.LSDREQRAVYDEQ.TVDE.SPV.TQDRDWEAYWRLLFKKIS.. | |
Retrocopy | VHPDWVGEGDKEDATRCFQILGKVYSILSDREQRAVYDEQRTVDEGSPVFTQDRDWEAYWRLLFKKISXX |
Parental | DIQAFEKTFKGSEEELADIKQAYLDFRGDMDQIMESVLCVQYTEEPRIRNIIQQAIDAGEVPSYNAFVKE |
...............LADIKQAYLDF.GDMDQIMESVLCVQYTEEPRIRNIIQQAIDAGEVPSYNAFVKE | |
Retrocopy | XXXXXXXXXXXXXXXLADIKQAYLDFKGDMDQIMESVLCVQYTEEPRIRNIIQQAIDAGEVPSYNAFVKE |
Parental | SKQKMNARKRRAQEEAKEAEMSRKELGLDEGVDSLKAAIQSRQKDRQKEMDNFLAQMEAKYCK-SSKGGG |
SKQKMNARKRRAQEEAKEAEMSRKELGLDEGVDSLKAAIQSRQKDRQKEMDNFLAQMEAKY....S..GG | |
Retrocopy | SKQKMNARKRRAQEEAKEAEMSRKELGLDEGVDSLKAAIQSRQKDRQKEMDNFLAQMEAKYLL>KSSKGG |
Parental | -KKSALKKE |
.KKSALKKE | |
Retrocopy | GKKSALKKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .88 RPM | 5 .81 RPM |
SRP007412_cerebellum | 1 .34 RPM | 5 .11 RPM |
SRP007412_heart | 0 .48 RPM | 5 .72 RPM |
SRP007412_kidney | 0 .53 RPM | 6 .96 RPM |
SRP007412_liver | 0 .49 RPM | 4 .41 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2448 |
Pan troglodytes | retro_ptro_1414 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016933 | 1 retrocopy | |
Felis catus | ENSFCAG00000004448 | 1 retrocopy | |
Homo sapiens | ENSG00000213551 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015046 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000004539 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000003792 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016595 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003496 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000002343 | 2 retrocopies |
retro_pabe_1126, retro_pabe_1799 ,
|
Pan troglodytes | ENSPTRG00000034219 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000028067 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000011504 | 1 retrocopy |