RetrogeneDB ID: | retro_fcat_1316 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:157197653..157198064(+) | ||
Located in intron of: | ENSFCAG00000027563 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC5L | ||
Ensembl ID: | ENSFCAG00000028753 | ||
Aliases: | None | ||
Description: | actin related protein 2/3 complex, subunit 5-like [Source:HGNC Symbol;Acc:23366] |
Percent Identity: | 72.66 % |
Parental protein coverage: | 90.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQWDMLRAFHAALRNSPVNTKNQAVKE |
....F..VDID.FDEN.F...QEEAA.A...P.PDP.E.DGLL.Q...LRAF..AL.N.P.NTKNQAVKE | |
Retrocopy | MAQNFHWVDIDKFDENRFLGKQEEAAVA--RPCPDPGEADGLLQQGGVLRAFRSALQNCPINTKNQAVKE |
Parental | RAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPTENSSAVLLQWHEKALAVGGLGSII |
R.Q..VLKVLT.FKS..IEQAV.SLDRNGIDL..KYIYKGFEKPTENSSAVL.QWHEKALAVGGLGSI. | |
Retrocopy | RSQSMVLKVLTDFKSRAIEQAVHSLDRNGIDLPIKYIYKGFEKPTENSSAVLPQWHEKALAVGGLGSIM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 11 .25 RPM |
SRP017611_kidney | 0 .31 RPM | 6 .39 RPM |
SRP017611_liver | 0 .00 RPM | 2 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016540 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006730 | 4 retrocopies | |
Felis catus | ENSFCAG00000028753 | 1 retrocopy |
retro_fcat_1316 ,
|
Macaca mulatta | ENSMMUG00000020628 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000013924 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002997 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000013936 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021362 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000014317 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000007907 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000008398 | 1 retrocopy |