RetrogeneDB ID: | retro_fcat_1393 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:42133004..42133540(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CRLS1 | ||
Ensembl ID: | ENSFCAG00000023647 | ||
Aliases: | None | ||
Description: | cardiolipin synthase 1 [Source:HGNC Symbol;Acc:16148] |
Percent Identity: | 58.06 % |
Parental protein coverage: | 89.16 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | NPWTIPNMLSMTRIGLAPVLGYLIIEEDFNIALGVFALAGLTDLLDGFIARNWANQKSA-LGSALDPLAD |
NP.TIP.MLSMTRI.LAPV.G..I..EDF..A.GVFA..G.TDLL.GFIA.N..N..S..LG..L.PLA. | |
Retrocopy | NPRTIPCMLSMTRINLAPVWGSWITGEDFGVAQGVFAFVGFTDLLGGFIA*N*DNCESI<LGNVLGPLAG |
Parental | KILIS-ILYVSLTYADLIPVPLTYMIISR-DVMLIAA-VF-YVRYRTLPTPRTLSKYFNPCYATARLKPT |
K......LY.SL.YA.L.PV.L..MI.S..DV.L.A...F.YVRY..LP..RT..K.FNPC..TA.LKPT | |
Retrocopy | KMPMA<TLYISLIYASLTPVSLACMITSQ<DVILVATNIF<YVRY*ILPVLRTVAKFFNPCCVTAKLKPT |
Parental | FISKVNTAVQLILVAASLAAPVFNYADSIYLQILWCFTAFTTAASA |
F.SKVN.A..LI..A.SLA...F.YAD.I.LQ..WC.....TAASA | |
Retrocopy | FVSKVNIAARLIW-AVSLAPLLFSYADRIHLQ-TWCLIFCSTAASA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 14 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 48 .23 RPM |
SRP017611_liver | 0 .00 RPM | 48 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010596 | 1 retrocopy | |
Bos taurus | ENSBTAG00000000065 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000005934 | 1 retrocopy | |
Equus caballus | ENSECAG00000023869 | 2 retrocopies | |
Felis catus | ENSFCAG00000023647 | 1 retrocopy |
retro_fcat_1393 ,
|
Microcebus murinus | ENSMICG00000011666 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000006349 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021273 | 3 retrocopies |