RetrogeneDB ID: | retro_rnor_2977 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:124155035..124155661(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Crls1 | ||
Ensembl ID: | ENSRNOG00000021273 | ||
Aliases: | None | ||
Description: | Cardiolipin synthase [Source:UniProtKB/Swiss-Prot;Acc:Q5U2V5] |
Percent Identity: | 87.14 % |
Parental protein coverage: | 69.21 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | AQAPSARWVRASATSSYENPWTIPNLLSMTRIGLAPVLGYLILEEDFNVALGVFALAGLTDLLDGFIARN |
AQ..SAR.VRA.ATSSYENPWTIP.LLSM.RIGLA.VLGYLILEEDFN.ALGVFALAGLTDLLDGFIARN | |
Retrocopy | AQVLSARRVRARATSSYENPWTIPHLLSMMRIGLATVLGYLILEEDFNAALGVFALAGLTDLLDGFIARN |
Parental | WANQKSALGSALDPLADKVLISILYISLTYADLIPVPLTYMIISRDVMLIAAVFYVRYRTLPTPRTLAKY |
.ANQKSALGSALDPLADKV.ISILYISLTYADLI.VPLTYMIISRDV.LIA.VFYVRYRTLP.PRTLA.Y | |
Retrocopy | RANQKSALGSALDPLADKVFISILYISLTYADLISVPLTYMIISRDVLLIAVVFYVRYRTLPAPRTLA*Y |
Parental | FNPCYATARLKPTFISKVNTAVQLILVAASLAAPVFNYADSIYLQILWCCTAF-TTAASAYSYYHYGRKT |
.NPCY..A.LKPTF.SKVNTAVQLILVAASLAA.VFNYADSIYLQILWCCTAF..T.ASA.S.YH.GRKT | |
Retrocopy | INPCYTPAKLKPTFSSKVNTAVQLILVAASLAAAVFNYADSIYLQILWCCTAF<PTTASADS*YHCGRKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 30 .70 RPM |
SRP017611_liver | 0 .00 RPM | 17 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010596 | 1 retrocopy | |
Bos taurus | ENSBTAG00000000065 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000005934 | 1 retrocopy | |
Equus caballus | ENSECAG00000023869 | 2 retrocopies | |
Felis catus | ENSFCAG00000023647 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011666 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000006349 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021273 | 3 retrocopies |
retro_rnor_2865, retro_rnor_2866, retro_rnor_2977 ,
|